BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0659100 Os06g0659100|Os06g0659100
(426 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0659100 Similar to Squamosa-promoter binding protein 1 456 e-128
Os02g0177300 Similar to Squamosa-promoter binding protein 1 171 7e-43
Os04g0656500 Similar to Squamosa-promoter binding-like prot... 142 5e-34
Os03g0833300 Similar to Squamosa-promoter binding-like prot... 124 2e-28
Os09g0507100 Similar to Squamosa-promoter binding-like prot... 124 2e-28
Os04g0551500 SBP domain containing protein 122 5e-28
Os08g0531600 Similar to Squamosa-promoter binding-like prot... 122 7e-28
Os06g0703500 Similar to SBP-domain protein 5 (Fragment) 116 3e-26
Os08g0509600 Similar to Squamosa-promoter binding-like prot... 114 1e-25
Os01g0292900 Similar to Squamosa-promoter binding-like prot... 112 4e-25
Os02g0174100 SBP domain containing protein 111 9e-25
Os07g0505200 Similar to SBP-domain protein 6 (Fragment) 107 2e-23
Os01g0922600 Similar to SBP-domain protein 4 102 5e-22
Os05g0408200 SBP domain containing protein 99 4e-21
Os09g0491532 Similar to Squamosa-promoter binding protein 2 90 4e-18
Os11g0496700 72 5e-13
>Os06g0659100 Similar to Squamosa-promoter binding protein 1
Length = 426
Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust.
Identities = 255/426 (59%), Positives = 255/426 (59%)
Query: 1 MMSGRMNAAGDESPFPFGAMQAPGPGAYVGFDHGXXXXXXXXXXXQRAGMLQHHHHHMYD 60
MMSGRMNAAGDESPFPFGAMQAPGPGAYVGFDHG QRAGMLQHHHHHMYD
Sbjct: 1 MMSGRMNAAGDESPFPFGAMQAPGPGAYVGFDHGAAAVAAAAAAAQRAGMLQHHHHHMYD 60
Query: 61 GLDFAAAMQFGGGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVYPALGIV 120
GLDFAAAMQFGGGQD GDVYPALGIV
Sbjct: 61 GLDFAAAMQFGGGQDAPPHPQLLALPPSMAAPPPPPMPMPLQMPMTMPMPGDVYPALGIV 120
Query: 121 KREXXXXXXXXXXXXXXLNLGRRTYFSPGDMLAVDRLLMRSRXXXXXXXXXXXAHHQPPR 180
KRE LNLGRRTYFSPGDMLAVDRLLMRSR AHHQPPR
Sbjct: 121 KREGGGGGQDAAAGRIGLNLGRRTYFSPGDMLAVDRLLMRSRLGGVFGLGFGGAHHQPPR 180
Query: 181 CQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRS 240
CQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRS
Sbjct: 181 CQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRS 240
Query: 241 CRKRLAEHNRRRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTGDNKNVVSMSA 300
CRKRLAEHNRRRRK YTGDNKNVVSMSA
Sbjct: 241 CRKRLAEHNRRRRKPAAAATTAVAAAKDAAAAPVAAGKKPSGGAATSYTGDNKNVVSMSA 300
Query: 301 AKSPISSNTSVISCLPEQGKHXXXXXXXXXXXXXXXPPHESSAPQIGAMLXXXXXXXXXX 360
AKSPISSNTSVISCLPEQGKH PPHESSAPQIGAML
Sbjct: 301 AKSPISSNTSVISCLPEQGKHAAAAARPTALTLGGAPPHESSAPQIGAMLHHHHHHQQDH 360
Query: 361 XXVSSLVHINXXXXXXXXXXXXXXXXXXXXXXXTATNGEVXXXXXXXXXXXXXXXXXMHL 420
VSSLVHIN TATNGEV MHL
Sbjct: 361 MQVSSLVHINGGGGGGSNNILSCSSVCSSALPSTATNGEVSDQNNDNSHNNGGNNNNMHL 420
Query: 421 FEVDFM 426
FEVDFM
Sbjct: 421 FEVDFM 426
>Os02g0177300 Similar to Squamosa-promoter binding protein 1
Length = 458
Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/160 (63%), Positives = 108/160 (67%), Gaps = 17/160 (10%)
Query: 112 DVYP--ALGIVKRE---XXXXXXXXXXXXXXLNLGRRTYFSPGDMLAVDRLLMRSRXXXX 166
DVYP G VKRE LNLGRRTYFSP D+LAVDRLL+RSR
Sbjct: 111 DVYPFGGGGFVKREDGPVLDVVGGGGGGRIGLNLGRRTYFSPADVLAVDRLLLRSRLGGM 170
Query: 167 XXXXXXXA------------HHQPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAA 214
HHQPPRCQAEGCKADLS AKHYHRRHKVC++HAKA+ V A
Sbjct: 171 GMEMGMGMGVLGLGLAAAAHHHQPPRCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLA 230
Query: 215 SGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRK 254
+GKQQRFCQQCSRFHVL EFDEAKRSCRKRL EHNRRRRK
Sbjct: 231 AGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRK 270
>Os04g0656500 Similar to Squamosa-promoter binding-like protein 3
Length = 416
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 79/118 (66%), Gaps = 21/118 (17%)
Query: 138 LNLGRRTYFSPGDMLAVDRLLMRSRXXXXXXXXXXXAHHQPPRCQAEGCKADLSGAKHYH 197
LNLG RTYF P H PPRCQAEGCKADLS AK YH
Sbjct: 162 LNLGYRTYFPPRGGYTYG--------------------HHPPRCQAEGCKADLSSAKRYH 201
Query: 198 RRHKVCEYHAKAS-VVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRK 254
RRHKVCE+H+KA VV A G QRFCQQCSRFH+L EFD+AK+SCRKRLA+HNRRRRK
Sbjct: 202 RRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRK 259
>Os03g0833300 Similar to Squamosa-promoter binding-like protein 8
Length = 969
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 58/76 (76%)
Query: 179 PRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAK 238
P CQ EGC ADL+G + YHRRHKVCE HAKA+ QRFCQQCSRFH L EFDE K
Sbjct: 150 PACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGK 209
Query: 239 RSCRKRLAEHNRRRRK 254
RSCR+RLA HNRRRRK
Sbjct: 210 RSCRRRLAGHNRRRRK 225
>Os09g0507100 Similar to Squamosa-promoter binding-like protein 11
Length = 472
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/78 (71%), Positives = 62/78 (79%)
Query: 177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDE 236
Q P C +GCKADLS + YHRRHKVCE H+K VV SG++ RFCQQCSRFH+L EFDE
Sbjct: 111 QCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDE 170
Query: 237 AKRSCRKRLAEHNRRRRK 254
AKRSCRKRL HNRRRRK
Sbjct: 171 AKRSCRKRLDGHNRRRRK 188
>Os04g0551500 SBP domain containing protein
Length = 360
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 59/76 (77%)
Query: 179 PRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAK 238
PRCQ EGC L G K YHRRHKVCE HAKA V G +QRFCQQCSRFHVL EFD+AK
Sbjct: 106 PRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAK 165
Query: 239 RSCRKRLAEHNRRRRK 254
+SCR+RLA HN RRR+
Sbjct: 166 KSCRRRLAGHNERRRR 181
>Os08g0531600 Similar to Squamosa-promoter binding-like protein 3
Length = 455
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 61/80 (76%)
Query: 175 HHQPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEF 234
Q P C +GCK DLS + YHRRHKVCE H+K +V SG++ RFCQQCSRFH+L EF
Sbjct: 112 QQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEF 171
Query: 235 DEAKRSCRKRLAEHNRRRRK 254
DEAKRSCRKRL HNRRRRK
Sbjct: 172 DEAKRSCRKRLDGHNRRRRK 191
>Os06g0703500 Similar to SBP-domain protein 5 (Fragment)
Length = 475
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%)
Query: 181 CQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRS 240
CQ EGCK DLS A+ YHR+HKVCE H+KA V SG ++RFCQQCSRFH L EFD+ K+S
Sbjct: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
Query: 241 CRKRLAEHNRRRRK 254
CR+RL++HN RRRK
Sbjct: 240 CRRRLSDHNARRRK 253
>Os08g0509600 Similar to Squamosa-promoter binding-like protein 8
Length = 417
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 60/75 (80%)
Query: 180 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKR 239
RCQ EGC ADLSG K+Y+ RHKVC H+KA V +G +QRFCQQCSRFH+L EFD+ KR
Sbjct: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162
Query: 240 SCRKRLAEHNRRRRK 254
SCR+RLA HN RRR+
Sbjct: 163 SCRRRLAGHNERRRR 177
>Os01g0292900 Similar to Squamosa-promoter binding-like protein 2
Length = 862
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 179 PRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAK 238
P CQ +GC +LS A+ Y++RHKVCE H K+ VV + RFCQQCSRFH L EFDE K
Sbjct: 105 PCCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGK 164
Query: 239 RSCRKRLAEHNRRRRK 254
+SCR RLA+HNRRRRK
Sbjct: 165 KSCRSRLAQHNRRRRK 180
>Os02g0174100 SBP domain containing protein
Length = 251
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 59/75 (78%)
Query: 180 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKR 239
RCQ EGC +L G K YHR+H+VCE H+K V +G+++RFCQQCSRFH L+EFD+ KR
Sbjct: 67 RCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKR 126
Query: 240 SCRKRLAEHNRRRRK 254
SCR+RL +HN RRRK
Sbjct: 127 SCRRRLYDHNARRRK 141
>Os07g0505200 Similar to SBP-domain protein 6 (Fragment)
Length = 216
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 58/74 (78%)
Query: 181 CQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRS 240
CQ E C DLS A Y+RRHKVC+ H+K VV +G +QRFCQQCSRFH LTEFD+AKRS
Sbjct: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
Query: 241 CRKRLAEHNRRRRK 254
CR+RLA HN RRRK
Sbjct: 170 CRRRLAGHNERRRK 183
>Os01g0922600 Similar to SBP-domain protein 4
Length = 311
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 51/59 (86%)
Query: 196 YHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRK 254
YHRRHKVCE H+K +VV +G+QQRFCQQCSRFH+L EFDE KRSCRKRL HN+RRRK
Sbjct: 7 YHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRK 65
>Os05g0408200 SBP domain containing protein
Length = 842
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 55/75 (73%)
Query: 180 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKR 239
+CQ GC+AD+ K YHRRH+VC A A+ V G Q+R+CQQC +FH+L +FDE KR
Sbjct: 170 KCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKR 229
Query: 240 SCRKRLAEHNRRRRK 254
SCR++L HN+RRR+
Sbjct: 230 SCRRKLERHNKRRRR 244
>Os09g0491532 Similar to Squamosa-promoter binding protein 2
Length = 323
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 45/58 (77%)
Query: 197 HRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRK 254
H RHKVC HAK +V +G +QRFCQQCSRFH L EFD+ K+SCR+RLA HN RRRK
Sbjct: 20 HGRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRK 77
>Os11g0496700
Length = 162
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 181 CQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSR 227
C +GC++DLS + YHRRHKVCE HAK VV +G++QRFCQQCSR
Sbjct: 116 CSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSR 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,403,981
Number of extensions: 277662
Number of successful extensions: 969
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 16
Length of query: 426
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 322
Effective length of database: 11,605,545
Effective search space: 3736985490
Effective search space used: 3736985490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)