Os02g0174100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SBP domain containing protein.
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Os02g0174100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SBP domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.07 | 0.286 | 9.43 | 0.657 | 0.38 | 3.51 | 0.668 | -18.3 | 0.00429 | 4.51 | 1000 | 269 | -- | -- |
| 41.1 | 0.301 | 9.64 | -0.484 | 0.366 | 0.279 | 0.618 | -- | 0.00325 | 4.7 | 1000 | 269 | -- | -- |
| 38.14 | 0.29 | 9.45 | 0.592 | 0.371 | 3.05 | -- | -15.6 | -0.00307 | 4.37 | 1000 | 268 | -- | -- |
| 41.74 | 0.303 | 9.64 | -0.481 | 0.367 | 0.301 | -- | -- | -0.00206 | 4.58 | 1000 | 268 | -- | -- |
| 45.53 | 0.316 | 9.46 | 0.577 | -- | 2.98 | -- | -15.1 | 0.00542 | -- | 1000 | 210 | -- | -- |
| 43.23 | 0.308 | 9.63 | -0.533 | 0.372 | -- | 0.634 | -- | 0.0219 | 4.65 | -- | -- | -- | -- |
| 44.29 | 0.312 | 9.63 | -0.537 | 0.376 | -- | -- | -- | 0.0186 | 4.55 | -- | -- | -- | -- |
| 48.92 | 0.327 | 9.64 | -0.464 | -- | 0.32 | -- | -- | 0.00627 | -- | 1000 | 210 | -- | -- |
| 47.66 | 0.323 | 9.63 | -- | 0.357 | 0.381 | -- | -- | 0.0444 | 4.62 | 1000 | 268 | -- | -- |
| 51.81 | 0.336 | 9.64 | -0.522 | -- | -- | -- | -- | 0.0284 | -- | -- | -- | -- | -- |
| 51.89 | 0.337 | 9.62 | -- | 0.366 | -- | -- | -- | 0.0784 | 4.59 | -- | -- | -- | -- |
| 54.42 | 0.345 | 9.63 | -- | -- | 0.397 | -- | -- | 0.0508 | -- | 1000 | 268 | -- | -- |
| 59.01 | 0.359 | 9.62 | -- | -- | -- | -- | -- | 0.0864 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.15 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 3 | 35.17 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 9 | 35.29 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 17 | 35.34 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 36 | 35.43 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 44 | 35.48 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 47 | 35.49 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 48 | 35.49 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 52 | 35.51 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 57 | 35.53 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 66 | 35.55 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 83 | 35.61 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 21 | 15 |
| 93 | 35.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 96 | 35.66 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 122 | 35.79 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 124 | 35.81 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 148 | 35.89 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 149 | 35.90 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 175 | 36.05 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 214 | 36.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 11 |
| 221 | 36.25 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 235 | 36.29 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 254 | 36.31 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 275 | 36.34 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 306 | 36.36 | temperature | 15.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 311 | 36.37 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 387 | 36.43 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 389 | 36.44 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 397 | 36.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 448 | 36.53 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 450 | 36.54 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 460 | 36.56 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 498 | 36.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 499 | 36.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 522 | 36.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 533 | 36.67 | temperature | 10.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 542 | 36.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 544 | 36.68 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 548 | 36.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 551 | 36.69 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 564 | 36.71 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 567 | 36.71 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 621 | 36.79 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 625 | 36.79 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 627 | 36.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 647 | 36.82 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 654 | 36.83 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 683 | 36.87 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 686 | 36.88 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 690 | 36.88 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 697 | 36.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 699 | 36.89 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 738 | 36.94 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 772 | 36.97 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 6 |
| 786 | 36.97 | temperature | 30.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 791 | 36.98 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 806 | 36.99 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 827 | 37.01 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 4 |
| 838 | 37.02 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 840 | 37.03 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 6 |
| 874 | 37.06 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 24 | 22 |
| 877 | 37.06 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 886 | 37.07 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 907 | 37.09 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 21 | 22 |
| 948 | 37.14 | atmosphere | 1000.0 | 270 | > th | dose independent | no | NA | NA |
| 949 | 37.14 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 981 | 37.17 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 982 | 37.17 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 2 |
| 989 | 37.18 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 19 |
| 996 | 37.18 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 17 |