Os01g0922600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SBP-domain protein 4.
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Os01g0922600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SBP-domain protein 4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.48 | 0.603 | 8.3 | 0.0928 | 0.404 | 3.55 | 0.233 | 0.478 | 0.296 | 9.85 | 20.53 | 5485 | -- | -- |
| 164.6 | 0.598 | 8.31 | -0.0051 | 0.397 | 3.52 | 0.22 | -- | 0.273 | 9.84 | 20.83 | 5486 | -- | -- |
| 164.65 | 0.598 | 8.3 | 0.0976 | 0.401 | 3.55 | -- | 0.464 | 0.295 | 10.1 | 20.52 | 5485 | -- | -- |
| 164.74 | 0.598 | 8.31 | 0.0204 | 0.403 | 3.51 | -- | -- | 0.284 | 10.1 | 20.93 | 5486 | -- | -- |
| 171.1 | 0.609 | 8.33 | 0.0447 | -- | 3.45 | -- | 0.144 | 0.233 | -- | 20.97 | 5874 | -- | -- |
| 528.45 | 1.08 | 8.14 | 1.65 | 0.281 | -- | 1.17 | -- | 1.09 | 5.82 | -- | -- | -- | -- |
| 531 | 1.08 | 8.14 | 1.66 | 0.311 | -- | -- | -- | 1.08 | 7.27 | -- | -- | -- | -- |
| 171.1 | 0.609 | 8.34 | 0.0143 | -- | 3.43 | -- | -- | 0.218 | -- | 21.01 | 5879 | -- | -- |
| 164.74 | 0.598 | 8.32 | -- | 0.402 | 3.52 | -- | -- | 0.277 | 10.1 | 20.85 | 5486 | -- | -- |
| 536.12 | 1.08 | 8.14 | 1.66 | -- | -- | -- | -- | 1.09 | -- | -- | -- | -- | -- |
| 603.36 | 1.15 | 8.18 | -- | 0.328 | -- | -- | -- | 0.899 | 6.94 | -- | -- | -- | -- |
| 171.09 | 0.609 | 8.34 | -- | -- | 3.43 | -- | -- | 0.209 | -- | 20.98 | 5906 | -- | -- |
| 609.02 | 1.15 | 8.19 | -- | -- | -- | -- | -- | 0.904 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.82 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 2 | 142.22 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 10 | 144.50 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 11 | 144.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 30 | 147.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 31 | 147.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 32 | 147.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 36 | 147.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 97 | 162.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 98 | 162.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 108 | 163.87 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 115 | 164.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 173 | 165.18 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 195 | 165.75 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 199 | 165.92 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 228 | 166.42 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 244 | 166.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 247 | 166.85 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 255 | 166.95 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 6 |
| 268 | 167.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 279 | 167.57 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 282 | 167.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 310 | 168.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 320 | 168.52 | temperature | 20 | 4320 | > th | dose dependent | sin | 3 | NA |
| 348 | 169.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 400 | 169.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 408 | 169.73 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 434 | 169.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 439 | 170.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 441 | 170.02 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 470 | 170.32 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 473 | 170.37 | temperature | 20 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 490 | 170.56 | temperature | 10 | 4320 | > th | dose dependent | sin | 2 | NA |
| 516 | 170.85 | radiation | 1 | 14400 | < th | dose dependent | sin | 16 | NA |
| 700 | 172.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 736 | 172.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 791 | 173.10 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 792 | 173.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 991 | 174.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |