Os02g0177300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Squamosa-promoter binding protein 1.
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Os02g0177300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Squamosa-promoter binding protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.13 | 0.231 | 2.6 | -0.646 | 0.0221 | -24.3 | -0.0448 | -51.4 | 0.00639 | 23.5 | 2 | 6 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 24.85 | 0.234 | 2.91 | -0.00463 | 0.0171 | -- | 0.0146 | -- | 0.00124 | 1.26 | -- | -- | -- | -- |
| 24.85 | 0.233 | 2.91 | -0.00508 | 0.0171 | -- | -- | -- | 0.00122 | 0.608 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 24.87 | 0.233 | 2.91 | -0.00448 | -- | -- | -- | -- | 0.00151 | -- | -- | -- | -- | -- |
| 24.85 | 0.233 | 2.91 | -- | 0.0171 | -- | -- | -- | 0.00178 | 0.594 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 24.87 | 0.233 | 2.91 | -- | -- | -- | -- | -- | 0.00201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.37 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 18 | 21.37 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 35 | 21.39 | radiation | 20 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 97 | 21.48 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 1 |
| 255 | 21.79 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 1 |
| 257 | 21.80 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 269 | 22.01 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 357 | 22.18 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 1 |
| 398 | 22.25 | wind | 3 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 441 | 22.38 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 451 | 22.45 | humidity | 60 | 10 | < th | dose independent | sin | 12 | NA |
| 496 | 22.48 | humidity | 60 | 10 | > th | dose independent | sin | 12 | NA |
| 549 | 22.58 | humidity | 60 | 10 | < th | dose dependent | sin | 12 | NA |
| 631 | 22.77 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 637 | 22.79 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 644 | 22.82 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 14 | 3 |
| 870 | 23.14 | wind | 7 | 30 | > th | dose dependent | rect. | 1 | 9 |
| 881 | 23.15 | wind | 7 | 10 | > th | dose dependent | rect. | 9 | 2 |
| 898 | 23.16 | wind | 9 | 30 | > th | dose independent | rect. | 1 | 10 |
| 948 | 23.17 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 958 | 23.18 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 960 | 23.18 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 995 | 23.19 | humidity | 60 | 10 | > th | dose independent | rect. | 14 | 12 |