Os05g0408200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SBP domain containing protein.
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Os05g0408200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SBP domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.84 | 0.325 | 11.7 | 0.155 | 1.83 | 0.855 | 0.394 | -2.26 | 0.21 | 9.13 | 30.4 | 1915 | -- | -- |
| 49.08 | 0.326 | 11.8 | -0.101 | 1.83 | 0.718 | 0.796 | -- | 0.193 | 9.09 | 30.4 | 1970 | -- | -- |
| 48.38 | 0.324 | 11.7 | 0.159 | 1.83 | 0.859 | -- | -2.2 | 0.211 | 9.13 | 30.4 | 1926 | -- | -- |
| 48.56 | 0.325 | 11.8 | -0.144 | 1.84 | 0.612 | -- | -- | 0.214 | 9.1 | 30.5 | 1926 | -- | -- |
| 216.16 | 0.685 | 11.8 | 0.372 | -- | 1.07 | -- | -1.98 | 0.424 | -- | 29.44 | 555 | -- | -- |
| 58.06 | 0.357 | 11.7 | -0.288 | 1.89 | -- | 0.479 | -- | 0.304 | 9.11 | -- | -- | -- | -- |
| 58.86 | 0.359 | 11.7 | -0.271 | 1.89 | -- | -- | -- | 0.304 | 9.11 | -- | -- | -- | -- |
| 167.19 | 0.602 | 11.7 | 0.193 | -- | 1.49 | -- | -- | 0.722 | -- | 26.2 | 722 | -- | -- |
| 49.04 | 0.326 | 11.8 | -- | 1.83 | 0.638 | -- | -- | 0.22 | 9.13 | 30.46 | 1926 | -- | -- |
| 265.47 | 0.761 | 11.8 | -0.276 | -- | -- | -- | -- | 0.315 | -- | -- | -- | -- | -- |
| 60.8 | 0.365 | 11.7 | -- | 1.89 | -- | -- | -- | 0.334 | 9.12 | -- | -- | -- | -- |
| 167.95 | 0.604 | 11.7 | -- | -- | 1.44 | -- | -- | 0.692 | -- | 26.3 | 707 | -- | -- |
| 267.47 | 0.763 | 11.8 | -- | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 2 | 38.36 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 7 | 39.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 10 | 39.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 12 | 39.47 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 14 | 39.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 16 | 39.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 19 | 39.59 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 20 | 39.63 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 26 | 39.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 34 | 39.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 35 | 39.66 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 38 | 39.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 20 |
| 39 | 39.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 45 | 39.82 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 20 |
| 48 | 39.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 4 |
| 50 | 39.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 64 | 40.29 | humidity | 70.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 71 | 40.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 78 | 40.70 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 82 | 40.80 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 83 | 40.82 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 87 | 40.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 89 | 40.91 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 90 | 40.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 91 | 40.91 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 92 | 40.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 93 | 40.92 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 96 | 40.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 97 | 40.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 98 | 40.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 100 | 40.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 101 | 40.95 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 106 | 40.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 107 | 40.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 108 | 40.95 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 117 | 40.98 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 124 | 41.02 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 131 | 41.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 136 | 41.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 9 |
| 137 | 41.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 143 | 41.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 6 |
| 144 | 41.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 15 |
| 145 | 41.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 6 |
| 146 | 41.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 15 |
| 165 | 41.29 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 180 | 41.40 | radiation | 40.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 206 | 41.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 226 | 41.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 18 |
| 230 | 41.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 256 | 41.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 15 |
| 257 | 41.56 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 261 | 41.58 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 277 | 41.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 400 | 42.12 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 19 |
| 427 | 42.26 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 428 | 42.26 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 16 | 5 |
| 433 | 42.28 | wind | 9.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 439 | 42.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 10 |
| 441 | 42.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 466 | 42.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 511 | 42.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 512 | 42.41 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 513 | 42.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 559 | 42.53 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 570 | 42.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 588 | 42.62 | wind | 1.0 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 608 | 42.67 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 612 | 42.68 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 616 | 42.70 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 5 |
| 619 | 42.70 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 5 |
| 624 | 42.72 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 628 | 42.73 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 634 | 42.75 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 636 | 42.75 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 638 | 42.75 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 639 | 42.75 | temperature | 10.0 | 10 | > th | dose independent | rect. | 21 | 19 |
| 646 | 42.76 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 681 | 42.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 700 | 42.93 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 15 |
| 712 | 42.97 | humidity | 50.0 | 10 | > th | dose independent | rect. | 17 | 3 |
| 727 | 42.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 778 | 43.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 796 | 43.09 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 810 | 43.12 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 21 | 19 |
| 827 | 43.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 5 |
| 868 | 43.19 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 881 | 43.19 | wind | 9.0 | 10 | < th | dose independent | rect. | 21 | 19 |
| 888 | 43.21 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 962 | 43.29 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 5 |
| 986 | 43.34 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 17 |