BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0408200 Os05g0408200|AK100057
(842 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0408200 SBP domain containing protein 1499 0.0
Os03g0833300 Similar to Squamosa-promoter binding-like prot... 122 8e-28
Os01g0292900 Similar to Squamosa-promoter binding-like prot... 111 3e-24
Os08g0513700 Hypothetical protein 97 5e-20
Os06g0659100 Similar to Squamosa-promoter binding protein 1 83 8e-16
Os04g0551500 SBP domain containing protein 77 7e-14
Os08g0509600 Similar to Squamosa-promoter binding-like prot... 77 7e-14
Os06g0703500 Similar to SBP-domain protein 5 (Fragment) 76 9e-14
Os09g0507100 Similar to Squamosa-promoter binding-like prot... 75 2e-13
Os02g0177300 Similar to Squamosa-promoter binding protein 1 74 4e-13
Os04g0656500 Similar to Squamosa-promoter binding-like prot... 73 7e-13
Os02g0174100 SBP domain containing protein 73 1e-12
Os08g0531600 Similar to Squamosa-promoter binding-like prot... 73 1e-12
>Os05g0408200 SBP domain containing protein
Length = 842
Score = 1499 bits (3881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/842 (87%), Positives = 740/842 (87%)
Query: 1 MDAPXXXXXXXXXXXXVDAGEPVWDWGNLLDFAVHDDDSLVLPWGDDSIGIXXXXXXXXX 60
MDAP VDAGEPVWDWGNLLDFAVHDDDSLVLPWGDDSIGI
Sbjct: 1 MDAPGGGGGGGGGGGGVDAGEPVWDWGNLLDFAVHDDDSLVLPWGDDSIGIEADPAEAAL 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXMQAEGSKRRVRKRDPRLVCPNYLAGRVPCACPEID 120
MQAEGSKRRVRKRDPRLVCPNYLAGRVPCACPEID
Sbjct: 61 LPPAPSPQPAEAEAEAAGPASLPSSMQAEGSKRRVRKRDPRLVCPNYLAGRVPCACPEID 120
Query: 121 EMAAALEVEDVATELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAEMKCQVPGCEADI 180
EMAAALEVEDVATELL TPAEMKCQVPGCEADI
Sbjct: 121 EMAAALEVEDVATELLAGARKKPKGAGRGSGAAVGGSGGGASRGTPAEMKCQVPGCEADI 180
Query: 181 RELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCXXXXXXXXX 240
RELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSC
Sbjct: 181 RELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNK 240
Query: 241 XXXXXPDSKGILEKDIDDQLDFSADGSGDGELREENIDVTTSETLETVLSNKVLDRETPV 300
PDSKGILEKDIDDQLDFSADGSGDGELREENIDVTTSETLETVLSNKVLDRETPV
Sbjct: 241 RRRRKPDSKGILEKDIDDQLDFSADGSGDGELREENIDVTTSETLETVLSNKVLDRETPV 300
Query: 301 GSDDVLSSPTCAQPSLQIDQSKSLVTFAASVEACLGTKQENTKLTNSPVHDTKSTYSSSC 360
GSDDVLSSPTCAQPSLQIDQSKSLVTFAASVEACLGTKQENTKLTNSPVHDTKSTYSSSC
Sbjct: 301 GSDDVLSSPTCAQPSLQIDQSKSLVTFAASVEACLGTKQENTKLTNSPVHDTKSTYSSSC 360
Query: 361 PTGRVSFKLYDWNPAEFPRRLRHQIFEWLSSMPVELEGYIRPGCTILTVFVAMPQHMWDK 420
PTGRVSFKLYDWNPAEFPRRLRHQIFEWLSSMPVELEGYIRPGCTILTVFVAMPQHMWDK
Sbjct: 361 PTGRVSFKLYDWNPAEFPRRLRHQIFEWLSSMPVELEGYIRPGCTILTVFVAMPQHMWDK 420
Query: 421 LSEDTGNLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGATLTSTRLEVQSPRIHYVH 480
LSEDTGNLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGATLTSTRLEVQSPRIHYVH
Sbjct: 421 LSEDTGNLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGATLTSTRLEVQSPRIHYVH 480
Query: 481 PSWFEAGKPIDLILCGSSLDQPKFRSLVSFDGLYLKHDCRRILSHETFDCIGSGEHILDS 540
PSWFEAGKPIDLILCGSSLDQPKFRSLVSFDGLYLKHDCRRILSHETFDCIGSGEHILDS
Sbjct: 481 PSWFEAGKPIDLILCGSSLDQPKFRSLVSFDGLYLKHDCRRILSHETFDCIGSGEHILDS 540
Query: 541 QHEIFRINITTSKLDTHGPAFVEVENMFGLSNFVPILVGSKHLCSELEQIHDALCGSSDI 600
QHEIFRINITTSKLDTHGPAFVEVENMFGLSNFVPILVGSKHLCSELEQIHDALCGSSDI
Sbjct: 541 QHEIFRINITTSKLDTHGPAFVEVENMFGLSNFVPILVGSKHLCSELEQIHDALCGSSDI 600
Query: 601 SSDPCELRGLRQTAMLGFLIDIGWLIRKPSIDEFQNLLSLANIQRWICMMKFLIQNDFIN 660
SSDPCELRGLRQTAMLGFLIDIGWLIRKPSIDEFQNLLSLANIQRWICMMKFLIQNDFIN
Sbjct: 601 SSDPCELRGLRQTAMLGFLIDIGWLIRKPSIDEFQNLLSLANIQRWICMMKFLIQNDFIN 660
Query: 661 VLEIIVNSLDNIIGSELLSNLEKGRLENHVTEFLGYVSEARNIVDNRPKYDKQRQVDTRW 720
VLEIIVNSLDNIIGSELLSNLEKGRLENHVTEFLGYVSEARNIVDNRPKYDKQRQVDTRW
Sbjct: 661 VLEIIVNSLDNIIGSELLSNLEKGRLENHVTEFLGYVSEARNIVDNRPKYDKQRQVDTRW 720
Query: 721 AGDYAPNQPKLGISVPLAESTGTSGEHDLHSTNAASGEEENMPLVTKALPHRQCCHPETS 780
AGDYAPNQPKLGISVPLAESTGTSGEHDLHSTNAASGEEENMPLVTKALPHRQCCHPETS
Sbjct: 721 AGDYAPNQPKLGISVPLAESTGTSGEHDLHSTNAASGEEENMPLVTKALPHRQCCHPETS 780
Query: 781 ARWLNAASIGAFPGGAMRMRLATTXXXXXXXXXXXXXXLFHPHRVGVLAAPVKRYLSRNY 840
ARWLNAASIGAFPGGAMRMRLATT LFHPHRVGVLAAPVKRYLSRNY
Sbjct: 781 ARWLNAASIGAFPGGAMRMRLATTVVIGAVVCFAACVVLFHPHRVGVLAAPVKRYLSRNY 840
Query: 841 SS 842
SS
Sbjct: 841 SS 842
>Os03g0833300 Similar to Squamosa-promoter binding-like protein 8
Length = 969
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 168/361 (46%), Gaps = 43/361 (11%)
Query: 358 SSCPTGRVSFKLYDWNPAEFPRRLRHQIFEWLSSMPVELEGYIRPGCTILTVFVAMPQHM 417
+ C T ++ FKL++ P++ P LR QI WLSS P ++E YIRPGC ILTV++ + +
Sbjct: 435 AQCRTDKIVFKLFEKVPSDLPPVLRSQILGWLSSSPTDIESYIRPGCIILTVYLRLVESA 494
Query: 418 WDKLSEDTGNLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGATLTSTRLEVQSPRIH 477
W +LS++ + + L+N+ G F+ V + I A + + +L + P +
Sbjct: 495 WKELSDNMSSYLDKLLNSSTGNFWASGLVFVMVRHQI-------AFMHNGQLMLDRPLAN 547
Query: 478 YVHPSWFEAGKPIDLILCGSSLDQPKFRSLVSF--DGLYLKHDCRRILSHETFDCI---G 532
H ILC + P F + V+F +GL L D R++ CI
Sbjct: 548 SAHHYC--------KILCVRPIAAP-FSTKVNFRVEGLNLVSDSSRLICSFEGSCIFQED 598
Query: 533 SGEHILDSQH-EIFRINITTSKLDTHGPAFVEVENMFGLSN-FVPILVGSKHLCSELEQI 590
+ + D +H +I +N + G FVEVE+ G SN F P ++ + +CSE+ ++
Sbjct: 599 TDNIVDDVEHDDIEYLNFCCPLPSSRGRGFVEVEDG-GFSNGFFPFIIAEQDICSEVCEL 657
Query: 591 HDALCGSSDISSDPCELRGLRQTAMLGFLIDIGWLIRKPSIDEFQNLLSLA--NIQR--- 645
SS +D R L FL ++GWL+ + +I Q+ + LA NI R
Sbjct: 658 ESIFESSSHEQADDDNAR----NQALEFLNELGWLLHRANIISKQDKVPLASFNIWRFRN 713
Query: 646 ---------WICMMKFLIQNDFINVLEIIVNSLDNIIGSE-LLSNLEKGRLENHVTEFLG 695
W + K L+ F +++I S + ++ SE LL + + V LG
Sbjct: 714 LGIFAMEREWCAVTKLLLDFLFTGLVDIGSQSPEEVVLSENLLHAAVRMKSAQMVRFLLG 773
Query: 696 Y 696
Y
Sbjct: 774 Y 774
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 165 TPAEMKCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDF 224
+P+ CQV GC AD+ ++ YHRRH+VC A A ++ +R+CQQC +FH L +F
Sbjct: 146 SPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEF 205
Query: 225 DEDKRSC 231
DE KRSC
Sbjct: 206 DEGKRSC 212
>Os01g0292900 Similar to Squamosa-promoter binding-like protein 2
Length = 862
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 141/316 (44%), Gaps = 20/316 (6%)
Query: 362 TGRVSFKLYDWNPAEFPRRLRHQIFEWLSSMPVELEGYIRPGCTILTVFVAMPQHMWDKL 421
T ++ FKL+ P +FP LR QI WLS+ P ++E YIRPGC ILT+++ +P MWDKL
Sbjct: 310 TDKIVFKLFGKEPNDFPSDLRAQILSWLSNCPSDIESYIRPGCIILTIYMRLPNWMWDKL 369
Query: 422 SEDTGNLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGATLTSTRLEV--QSPRIHYV 479
+ D + ++ L++ L G + V + + L S +I ++
Sbjct: 370 AADPAHWIQKLISLSTDTLWRTGWMYARVQDYLTLSCNGNLMLASPWQPAIGNKHQILFI 429
Query: 480 HPSWFEAGKPIDLILCGSSLDQPKFRSLVSFDGLYLKHDCRRILSHETFDCIGSGEHILD 539
P + + G ++ QP + L F G YL + L +T + G L
Sbjct: 430 TPIAVACSSTANFSVKGLNIAQPTTKLLCIFGGKYLIQEATEKLLDDTK--MQRGPQCL- 486
Query: 540 SQHEIFRINITTSKLDTHGPAFVEVENMFGLSNFVPILVGSKHLCSELEQIHD--ALCGS 597
+ S T G F+EVE++ S P +V + +CSE+ + L
Sbjct: 487 --------TFSCSFPSTSGRGFIEVEDLDQSSLSFPFVVAEEDVCSEIRTLEHLLNLVSF 538
Query: 598 SDISSDPCELRGLRQTAMLGFLIDIGWLIRKPSI----DEFQNLLSLANIQRWICMMKFL 653
D + +L R A L FL + GW +++ I + ++ R+ ++ F
Sbjct: 539 DDTLVEKNDLLASRDRA-LNFLHEFGWFLQRSHIRATSETPKDCTEGFPAARFRWLLSFA 597
Query: 654 IQNDFINVLEIIVNSL 669
+ +F V++ ++++L
Sbjct: 598 VDREFCAVIKKLLDTL 613
>Os08g0513700 Hypothetical protein
Length = 160
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 362 TGRVSFKLYDWNPAEFPRRLRHQIFEWLSSMPVELEGYIRPGCTILTVFVAMPQHMWDKL 421
TGR+ FKL+ P+ P LR +I WL P E+EGYIRPGC +L+++++MP WD+L
Sbjct: 17 TGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDEL 76
Query: 422 SEDTGNLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGAT-LTSTRLEVQSPRIHYVH 480
E+ V +LV + KG F + + + KDGAT L+ + +P + +V
Sbjct: 77 EENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSY-KDGATRLSKSWRTWNTPELTFVS 135
Query: 481 PSWFEAGKPIDLILCGSSLDQP 502
P G+ LIL G +L P
Sbjct: 136 PIAVVGGRKTSLILKGRNLTIP 157
>Os06g0659100 Similar to Squamosa-promoter binding protein 1
Length = 426
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%)
Query: 170 KCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKR 229
+CQ GC+AD+ K YHRRH+VC A A+ V G Q+R+CQQC +FH+L +FDE KR
Sbjct: 180 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKR 239
Query: 230 SC 231
SC
Sbjct: 240 SC 241
>Os04g0551500 SBP domain containing protein
Length = 360
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 166 PAEMKCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFD 225
P +CQV GC+ ++ +K YHRRH+VC A A V++ G ++R+CQQC +FH+L +FD
Sbjct: 103 PVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFD 162
Query: 226 EDKRSC 231
+ K+SC
Sbjct: 163 DAKKSC 168
>Os08g0509600 Similar to Squamosa-promoter binding-like protein 8
Length = 417
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 46/62 (74%)
Query: 170 KCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKR 229
+CQV GC AD+ +K Y+ RH+VC + A V++ G+++R+CQQC +FH+L +FD+ KR
Sbjct: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162
Query: 230 SC 231
SC
Sbjct: 163 SC 164
>Os06g0703500 Similar to SBP-domain protein 5 (Fragment)
Length = 475
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 171 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRS 230
CQV GC+ D+ + YHR+H+VC + A V++ G+++R+CQQC +FH L +FD+ K+S
Sbjct: 180 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKS 239
Query: 231 C 231
C
Sbjct: 240 C 240
>Os09g0507100 Similar to Squamosa-promoter binding-like protein 11
Length = 472
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 171 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRS 230
C V GC+AD+ + + YHRRH+VC + V++ G + R+CQQC +FH+L +FDE KRS
Sbjct: 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRS 174
Query: 231 C 231
C
Sbjct: 175 C 175
>Os02g0177300 Similar to Squamosa-promoter binding protein 1
Length = 458
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 170 KCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKR 229
+CQ GC+AD+ K YHRRH+VC A AAAV+ G Q+R+CQQC +FH+L +FDE KR
Sbjct: 196 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKR 255
Query: 230 SC 231
SC
Sbjct: 256 SC 257
>Os04g0656500 Similar to Squamosa-promoter binding-like protein 3
Length = 416
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 170 KCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVML-DGVQKRYCQQCGKFHILLDFDEDK 228
+CQ GC+AD+ K YHRRH+VC + A V+ G+ +R+CQQC +FH+L +FD+ K
Sbjct: 184 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAK 243
Query: 229 RSC 231
+SC
Sbjct: 244 KSC 246
>Os02g0174100 SBP domain containing protein
Length = 251
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 169 MKCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDK 228
++CQV GC ++ +K YHR+HRVC + V++ G ++R+CQQC +FH L +FD+ K
Sbjct: 66 VRCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKK 125
Query: 229 RSC 231
RSC
Sbjct: 126 RSC 128
>Os08g0531600 Similar to Squamosa-promoter binding-like protein 3
Length = 455
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 171 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRS 230
C V GC+ D+ + + YHRRH+VC + V++ G + R+CQQC +FH+L +FDE KRS
Sbjct: 118 CAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRS 177
Query: 231 C 231
C
Sbjct: 178 C 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,355,996
Number of extensions: 1048223
Number of successful extensions: 2425
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 2419
Number of HSP's successfully gapped: 16
Length of query: 842
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 733
Effective length of database: 11,344,475
Effective search space: 8315500175
Effective search space used: 8315500175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)