Os08g0513700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0513700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.74 | 0.318 | 8.93 | 0.383 | 1.19 | -0.975 | -0.162 | 2.44 | 0.366 | 6.26 | 25.63 | 10 | -- | -- |
| 47.48 | 0.321 | 8.95 | 0.176 | 1.21 | -0.755 | -0.287 | -- | 0.384 | 6.21 | 22.01 | 17 | -- | -- |
| 45.79 | 0.315 | 8.93 | 0.386 | 1.2 | -0.979 | -- | 2.54 | 0.365 | 6.26 | 25.7 | 10 | -- | -- |
| 47.24 | 0.32 | 8.95 | 0.186 | 1.17 | -0.749 | -- | -- | 0.379 | 6.1 | 22.1 | 97 | -- | -- |
| 81.95 | 0.422 | 8.89 | 0.919 | -- | -1.86 | -- | 3.91 | 0.604 | -- | 24.2 | 276 | -- | -- |
| 56.5 | 0.352 | 8.97 | 0.0189 | 1.4 | -- | -0.187 | -- | 0.26 | 5.59 | -- | -- | -- | -- |
| 56.58 | 0.352 | 8.97 | 0.0182 | 1.4 | -- | -- | -- | 0.26 | 5.6 | -- | -- | -- | -- |
| 88.78 | 0.439 | 8.96 | 0.315 | -- | -1.57 | -- | -- | 0.449 | -- | 24.15 | 273 | -- | -- |
| 48 | 0.323 | 8.95 | -- | 1.17 | -0.693 | -- | -- | 0.351 | 6.04 | 22.26 | 114 | -- | -- |
| 158.68 | 0.589 | 8.99 | 0.0635 | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
| 56.59 | 0.352 | 8.97 | -- | 1.4 | -- | -- | -- | 0.258 | 5.6 | -- | -- | -- | -- |
| 91.41 | 0.445 | 8.97 | -- | -- | -1.52 | -- | -- | 0.41 | -- | 24.2 | 273 | -- | -- |
| 158.79 | 0.588 | 8.99 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 8 | 43.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 27 | 44.54 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 29 | 44.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 30 | 44.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 31 | 44.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 47 | 44.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 51 | 44.82 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 61 | 44.88 | temperature | 20 | 90 | > th | dose dependent | sin | 0 | NA |
| 90 | 45.03 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 18 |
| 94 | 45.05 | temperature | 25 | 10 | > th | dose dependent | sin | 23 | NA |
| 122 | 45.21 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 138 | 45.26 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 208 | 45.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 210 | 45.60 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 216 | 45.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 227 | 45.63 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 245 | 45.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 254 | 45.68 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 256 | 45.68 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 262 | 45.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 263 | 45.70 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 270 | 45.72 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 272 | 45.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 278 | 45.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 332 | 45.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 337 | 45.88 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 339 | 45.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 346 | 45.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 364 | 45.91 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 411 | 46.01 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 419 | 46.02 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 430 | 46.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 490 | 46.10 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 535 | 46.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 592 | 46.21 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |