BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0513700 Os08g0513700|J075094D17
(160 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20980.1 | chr1:7325042-7328933 FORWARD LENGTH=1036 207 2e-54
AT1G76580.1 | chr1:28734600-28738451 FORWARD LENGTH=989 191 1e-49
AT2G47070.1 | chr2:19337144-19340552 FORWARD LENGTH=882 121 2e-28
AT3G60030.1 | chr3:22165856-22169410 REVERSE LENGTH=928 117 3e-27
AT5G18830.3 | chr5:6276116-6280362 FORWARD LENGTH=819 94 2e-20
>AT1G20980.1 | chr1:7325042-7328933 FORWARD LENGTH=1036
Length = 1035
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 94/157 (59%), Positives = 121/157 (77%)
Query: 2 SDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLV 61
SD+SP + NSD QDRTG+I+FKL K+PS +PG LR EI NWL + P+EME YIRPGC+V
Sbjct: 490 SDYSPPSLNSDAQDRTGKIVFKLLDKDPSQLPGTLRSEIYNWLSNIPSEMESYIRPGCVV 549
Query: 62 LSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRLSK 121
LS+Y++M AW++LE+ LLQR+ L+Q S DFWR RF+V T QL S+K+G R SK
Sbjct: 550 LSVYVAMSPAAWEQLEQKLLQRLGVLLQNSPSDFWRNARFIVNTGRQLASHKNGKVRCSK 609
Query: 122 SWRTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPG 158
SWRTWN+PEL VSP+AVV G +TSL+++GR+LT G
Sbjct: 610 SWRTWNSPELISVSPVAVVAGEETSLVVRGRSLTNDG 646
>AT1G76580.1 | chr1:28734600-28738451 FORWARD LENGTH=989
Length = 988
Score = 191 bits (485), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 117/157 (74%), Gaps = 2/157 (1%)
Query: 2 SDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLV 61
SD+SP + NS+ Q+RTG+I FKLF K+PS +P LR EI WL P++ME +IRPGC++
Sbjct: 455 SDYSPPSLNSNAQERTGKISFKLFEKDPSQLPNTLRTEIFRWLSSFPSDMESFIRPGCVI 514
Query: 62 LSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRLSK 121
LS+Y++M A AW++LEENLLQRV +LVQ D +FW RFLV QL S+K G RLSK
Sbjct: 515 LSVYVAMSASAWEQLEENLLQRVRSLVQ--DSEFWSNSRFLVNAGRQLASHKHGRIRLSK 572
Query: 122 SWRTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPG 158
SWRT N PEL VSP+AVV G +T+LI++GRNLT G
Sbjct: 573 SWRTLNLPELITVSPLAVVAGEETALIVRGRNLTNDG 609
>AT2G47070.1 | chr2:19337144-19340552 FORWARD LENGTH=882
Length = 881
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 13 GQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIA 72
Q RTGRI+FKLFGKEP+ P LRG+I++WL HSP +ME YIRPGC+VL++YL A
Sbjct: 357 AQMRTGRIVFKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETA 416
Query: 73 WDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRL--SKSWRTWNTPE 130
W+EL ++L + L+ SD W G VR QL +G + S S ++ +
Sbjct: 417 WEELSDDLGFSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSH 476
Query: 131 LTFVSPIAVVGGRKTSLILKGRNLTIPGTQ 160
+ V P+A+ K +KG NL GT+
Sbjct: 477 IISVKPLAIAATEKAQFTVKGMNLRQRGTR 506
>AT3G60030.1 | chr3:22165856-22169410 REVERSE LENGTH=928
Length = 927
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 13 GQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIA 72
Q RT RI+FKLFGKEP+ P LRG+I+NWL H+P +ME YIRPGC+VL++YL +
Sbjct: 398 AQSRTDRIVFKLFGKEPNDFPVALRGQILNWLAHTPTDMESYIRPGCIVLTIYLRQDEAS 457
Query: 73 WDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRLSKS--WRTWNTPE 130
W+EL +L + L+ SD W G +R QL +G L S R+ + +
Sbjct: 458 WEELCCDLSFSLRRLLDLSDDPLWTDGWLYLRVQNQLAFAFNGQVVLDTSLPLRSHDYSQ 517
Query: 131 LTFVSPIAVVGGRKTSLILKGRNLTIPGTQ 160
+ V P+AV +K +KG NL PGT+
Sbjct: 518 IITVRPLAVT--KKAQFTVKGINLRRPGTR 545
>AT5G18830.3 | chr5:6276116-6280362 FORWARD LENGTH=819
Length = 818
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%)
Query: 17 TGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDEL 76
TGRI FKL+ P+ P LR +I WL + P E+EGYIRPGC +L+++++MP I W +L
Sbjct: 320 TGRISFKLYDWNPAEFPRRLRHQIFQWLANMPVELEGYIRPGCTILTVFIAMPEIMWAKL 379
Query: 77 EENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRLSKSWRTWNTPELTFVSP 136
++ + ++ + + +G V + + G T L + +P+L FV P
Sbjct: 380 SKDPVAYLDEFILKPGKMLFGRGSMTVYLNNMIFRLIKGGTTLKRVDVKLESPKLQFVYP 439
Query: 137 IAVVGGRKTSLILKGRNLTIP 157
G+ L++ G+NL P
Sbjct: 440 TCFEAGKPIELVVCGQNLLQP 460
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,724,936
Number of extensions: 148137
Number of successful extensions: 300
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 5
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)