BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0513700 Os08g0513700|J075094D17
         (160 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0513700  Hypothetical protein                                330   3e-91
Os01g0292900  Similar to Squamosa-promoter binding-like prot...   112   2e-25
Os03g0833300  Similar to Squamosa-promoter binding-like prot...   101   2e-22
Os05g0408200  SBP domain containing protein                        97   5e-21

>Os08g0513700 Hypothetical protein
          Length = 160

 Score =  330 bits (846), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   CSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCL 60
           CSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCL
Sbjct: 1   CSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCL 60

Query: 61  VLSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRLS 120
           VLSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRLS
Sbjct: 61  VLSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRLS 120

Query: 121 KSWRTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPGTQ 160
           KSWRTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPGTQ
Sbjct: 121 KSWRTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPGTQ 160



>Os01g0292900 Similar to Squamosa-promoter binding-like protein 2
          Length = 862

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 2/149 (1%)

Query: 14  QDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIAW 73
           ++RT +I+FKLFGKEP+  P +LR +I++WL + P+++E YIRPGC++L++Y+ +P   W
Sbjct: 307 ENRTDKIVFKLFGKEPNDFPSDLRAQILSWLSNCPSDIESYIRPGCIILTIYMRLPNWMW 366

Query: 74  DELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRLSKSWR--TWNTPEL 131
           D+L  +    +  L+  S    WR G    R    L    +G   L+  W+    N  ++
Sbjct: 367 DKLAADPAHWIQKLISLSTDTLWRTGWMYARVQDYLTLSCNGNLMLASPWQPAIGNKHQI 426

Query: 132 TFVSPIAVVGGRKTSLILKGRNLTIPGTQ 160
            F++PIAV      +  +KG N+  P T+
Sbjct: 427 LFITPIAVACSSTANFSVKGLNIAQPTTK 455



>Os03g0833300 Similar to Squamosa-promoter binding-like protein 8
          Length = 969

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 2/148 (1%)

Query: 10  NSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMP 69
           N D Q RT +I+FKLF K PS +P  LR +I+ WL  SP ++E YIRPGC++L++YL + 
Sbjct: 432 NGDAQCRTDKIVFKLFEKVPSDLPPVLRSQILGWLSSSPTDIESYIRPGCIILTVYLRLV 491

Query: 70  AIAWDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSYKDGATRLSK--SWRTWN 127
             AW EL +N+   ++ L+  S  +FW  G   V    Q+    +G   L +  +    +
Sbjct: 492 ESAWKELSDNMSSYLDKLLNSSTGNFWASGLVFVMVRHQIAFMHNGQLMLDRPLANSAHH 551

Query: 128 TPELTFVSPIAVVGGRKTSLILKGRNLT 155
             ++  V PIA     K +  ++G NL 
Sbjct: 552 YCKILCVRPIAAPFSTKVNFRVEGLNLV 579



>Os05g0408200 SBP domain containing protein
          Length = 842

 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 2/142 (1%)

Query: 17  TGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDEL 76
           TGR+ FKL+   P+  P  LR +I  WL   P E+EGYIRPGC +L+++++MP   WD+L
Sbjct: 362 TGRVSFKLYDWNPAEFPRRLRHQIFEWLSSMPVELEGYIRPGCTILTVFVAMPQHMWDKL 421

Query: 77  EENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSY-KDGATRLSKSWRTWNTPELTFVS 135
            E+    V +LV   +     KG F +  +  +    KDGAT L+ +     +P + +V 
Sbjct: 422 SEDTGNLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGAT-LTSTRLEVQSPRIHYVH 480

Query: 136 PIAVVGGRKTSLILKGRNLTIP 157
           P     G+   LIL G +L  P
Sbjct: 481 PSWFEAGKPIDLILCGSSLDQP 502



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,875,939
Number of extensions: 230422
Number of successful extensions: 458
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 4
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)