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Os09g0507100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Squamosa-promoter binding-like protein 11.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.08 (0.0292) R2 : 0.443
β1 : -1.24 (0.14) R2dD : 0.22 R2D : -0.0342
β2 : 1.1 (0.0731) R2dC : 0.268 R2C : 0.264
β3 : -1.15 (0.131) R2dE : 0.181 R2E : -0.0441
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.315 (0.0664) R2dN8 : 0.0464 R2N8 : -0.0242
σ : 0.536
deviance : 132.65
__
_____
C
peak time of C : 4.05
E
wheather : temperature
threshold : 13.36
memory length : 11136
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.16 0.544 7.21 -1.29 1.08 -0.0187 0.635 4.33 -0.386 4.03 19.9 7221 -- --
135.08 0.541 7.08 -1.28 1.19 -1 1.24 -- -0.332 3.67 13.09 11150 -- --
135.22 0.542 7.21 -1.28 1.09 0.022 -- 4.35 -0.384 4.05 19.8 7472 -- --
132.65 0.536 7.08 -1.24 1.1 -1.15 -- -- -0.315 4.05 13.36 11136 -- --
198.82 0.657 7.19 -1.29 -- -0.51 -- 3.53 -0.374 -- 19.4 6947 -- --
163.22 0.599 7.05 -0.589 1.1 -- 0.484 -- -0.135 4.01 -- -- -- --
163.89 0.6 7.05 -0.595 1.1 -- -- -- -0.138 4.03 -- -- -- --
194.3 0.649 7.1 -1.58 -- -1.4 -- -- -0.356 -- 13.26 11207 -- --
165.45 0.599 7.04 -- 1.07 -0.877 -- -- -0.12 4.01 17.5 3272 -- --
230.08 0.709 7.05 -0.55 -- -- -- -- -0.109 -- -- -- -- --
173.22 0.616 7.03 -- 1.09 -- -- -- -0.0718 4.03 -- -- -- --
225.73 0.7 7.06 -- -- -1.07 -- -- -0.129 -- 19.01 2325 -- --
238.06 0.72 7.04 -- -- -- -- -- -0.0477 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 129.18 wind 3 43200 < th dose independent rect. 16 1
2 129.66 wind 3 43200 > th dose independent rect. 16 1
5 130.01 wind 3 43200 < th dose independent rect. 14 4
6 130.01 wind 5 43200 < th dose dependent rect. 16 1
8 130.20 wind 3 43200 < th dose independent rect. 14 6
9 130.20 wind 5 43200 < th dose dependent rect. 15 5
12 130.23 wind 5 43200 < th dose dependent rect. 16 3
14 130.29 wind 3 43200 > th dose independent rect. 15 5
25 130.45 wind 3 43200 < th dose dependent rect. 14 8
33 130.64 humidity 80 43200 > th dose independent rect. 12 21
46 130.84 radiation 1 14400 < th dose independent rect. 24 5
53 130.94 humidity 90 43200 < th dose dependent rect. 14 1
54 130.94 humidity 70 43200 > th dose dependent rect. 20 3
56 130.96 humidity 80 43200 < th dose dependent rect. 6 2
58 130.98 humidity 50 43200 > th dose dependent rect. 19 4
64 131.09 humidity 80 43200 > th dose independent rect. 19 22
65 131.09 humidity 70 43200 > th dose dependent rect. 21 1
71 131.14 humidity 80 43200 < th dose independent rect. 20 21
76 131.18 wind 5 43200 < th dose dependent rect. 18 1
77 131.18 radiation 40 43200 < th dose dependent rect. 24 5
81 131.19 humidity 50 43200 > th dose dependent rect. 18 6
83 131.23 humidity 50 43200 < th dose dependent rect. 17 16
84 131.24 humidity 80 43200 < th dose independent rect. 12 21
99 131.36 humidity 50 43200 < th dose dependent rect. 19 14
100 131.37 radiation 20 43200 < th dose independent rect. 24 6
107 131.42 radiation 20 14400 < th dose dependent rect. 24 5
121 131.52 humidity 50 43200 > th dose dependent rect. 12 17
122 131.54 humidity 50 43200 < th dose independent rect. 18 15
127 131.57 humidity 70 43200 < th dose independent rect. 6 1
129 131.59 humidity 50 43200 < th dose dependent rect. 7 1
136 131.63 humidity 70 43200 > th dose independent rect. 6 1
152 131.69 humidity 50 43200 < th dose dependent rect. 6 3
157 131.72 humidity 80 43200 < th dose independent sin 5 NA
170 131.76 humidity 60 43200 > th dose dependent sin 15 NA
186 131.81 humidity 50 43200 > th dose independent rect. 18 14
190 131.84 wind 1 43200 < th dose independent rect. 12 14
199 131.89 wind 1 43200 > th dose independent rect. 12 14
206 131.91 humidity 50 43200 > th dose independent rect. 6 2
221 131.97 wind 1 43200 < th dose independent rect. 9 17
224 131.98 humidity 80 43200 > th dose independent rect. 13 16
255 132.08 humidity 60 43200 > th dose dependent rect. 19 21
256 132.09 humidity 50 43200 < th dose independent rect. 6 3
258 132.09 humidity 80 43200 > th dose independent rect. 14 14
267 132.12 wind 1 43200 > th dose independent rect. 8 16
288 132.19 humidity 50 43200 < th dose independent rect. 7 1
322 132.28 wind 1 43200 > th dose dependent rect. 18 1
344 132.34 humidity 80 43200 > th dose independent sin 5 NA
377 132.42 radiation 1 4320 > th dose independent rect. 4 1
387 132.42 radiation 1 4320 > th dose dependent rect. 4 1
401 132.44 wind 1 43200 > th dose independent sin 19 NA
402 132.44 humidity 50 43200 > th dose independent rect. 18 6
434 132.48 wind 1 43200 < th dose dependent rect. 8 14
445 132.51 humidity 90 43200 < th dose dependent rect. 12 15
447 132.52 wind 1 43200 < th dose dependent sin 20 NA
467 132.56 humidity 80 43200 > th dose independent sin 15 NA
523 132.64 humidity 50 43200 < th dose independent rect. 18 4
537 132.67 humidity 50 43200 > th dose independent rect. 18 8
544 132.68 humidity 80 43200 > th dose independent no NA NA
571 132.73 wind 1 43200 < th dose independent sin 19 NA
606 132.79 humidity 60 43200 > th dose dependent no NA NA
609 132.80 temperature 20 270 < th dose independent rect. 21 18
624 132.81 humidity 60 43200 > th dose dependent rect. 14 23
625 132.82 humidity 80 43200 < th dose independent no NA NA
649 132.87 humidity 80 43200 < th dose independent rect. 23 15
673 132.93 humidity 50 43200 > th dose independent rect. 1 8
681 132.94 radiation 10 4320 < th dose independent rect. 2 4
709 133.00 humidity 80 43200 < th dose independent rect. 24 13
737 133.05 radiation 10 4320 < th dose independent rect. 5 1
768 133.10 humidity 60 43200 > th dose dependent rect. 2 23
787 133.14 humidity 80 43200 < th dose independent rect. 6 23
790 133.15 humidity 90 43200 < th dose dependent sin 15 NA
799 133.16 humidity 80 43200 < th dose independent rect. 14 14
801 133.16 humidity 90 43200 < th dose dependent rect. 19 4
810 133.17 humidity 90 43200 < th dose dependent rect. 19 21
820 133.20 humidity 90 43200 < th dose dependent rect. 21 19
825 133.21 humidity 90 43200 < th dose dependent rect. 18 6
858 133.27 humidity 50 43200 < th dose dependent rect. 17 5
884 133.31 humidity 80 43200 > th dose independent rect. 3 9
892 133.32 humidity 50 43200 < th dose dependent rect. 17 3
944 133.39 humidity 90 43200 < th dose dependent rect. 21 1
954 133.40 wind 1 43200 < th dose dependent rect. 2 1
976 133.44 humidity 80 43200 < th dose independent rect. 3 23
996 133.47 humidity 80 43200 > th dose independent rect. 6 23