BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0507100 Os09g0507100|Os09g0507100
(472 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0507100 Similar to Squamosa-promoter binding-like prot... 548 e-156
Os08g0531600 Similar to Squamosa-promoter binding-like prot... 291 9e-79
Os01g0922600 Similar to SBP-domain protein 4 135 6e-32
Os06g0703500 Similar to SBP-domain protein 5 (Fragment) 128 8e-30
Os03g0833300 Similar to Squamosa-promoter binding-like prot... 122 8e-28
Os04g0656500 Similar to Squamosa-promoter binding-like prot... 121 9e-28
Os08g0509600 Similar to Squamosa-promoter binding-like prot... 119 3e-27
Os02g0174100 SBP domain containing protein 118 7e-27
Os04g0551500 SBP domain containing protein 117 1e-26
Os02g0177300 Similar to Squamosa-promoter binding protein 1 115 8e-26
Os01g0292900 Similar to Squamosa-promoter binding-like prot... 114 1e-25
Os06g0659100 Similar to Squamosa-promoter binding protein 1 114 2e-25
Os07g0505200 Similar to SBP-domain protein 6 (Fragment) 109 5e-24
Os09g0491532 Similar to Squamosa-promoter binding protein 2 99 6e-21
Os05g0408200 SBP domain containing protein 92 6e-19
Os11g0496700 87 2e-17
Os11g0496600 70 3e-12
>Os09g0507100 Similar to Squamosa-promoter binding-like protein 11
Length = 472
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/472 (63%), Positives = 299/472 (63%)
Query: 1 MDWDLKMPVSWDLAELEHNAVPNMXXXXXXXXXXXXXXXXSRGAPGRPECSVDLKLGGLG 60
MDWDLKMPVSWDLAELEHNAVPNM SRGAPGRPECSVDLKLGGLG
Sbjct: 1 MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLG 60
Query: 61 EFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTLKRPRXXXXXXXXQCPSCAVDGC 120
EFG TSTLKRPR QCPSCAVDGC
Sbjct: 61 EFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGC 120
Query: 121 KADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLD 180
KADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLD
Sbjct: 121 KADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLD 180
Query: 181 GHNRRRRKPQADSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSXXXXXXX 240
GHNRRRRKPQADSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYS
Sbjct: 181 GHNRRRRKPQADSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSHHHHPHP 240
Query: 241 VMTSRQPHFVGXXXXXXXXXXXXKEGRRFPFLHEGDQISFXXXXXXXXXXTLEISVCQTT 300
VMTSRQPHFVG KEGRRFPFLHEGDQISF TLEISVCQTT
Sbjct: 241 VMTSRQPHFVGSPSSATTAAFSPKEGRRFPFLHEGDQISFGGGGGAAAAATLEISVCQTT 300
Query: 301 VVAXXXXXXXXXNKMFSSDGLXXXXXXXXXXXXXXXXXQVXXXXXXXXXXXXXXXXXXXX 360
VVA NKMFSSDGL QV
Sbjct: 301 VVAPPPPESSSSNKMFSSDGLTTATTTTTTAHHHHHHHQVLDSDCALSLLSSPANSSSVD 360
Query: 361 XXRMVQPSPXXXXXXXXXXXXQIPMAQPLVPNLQQQXXXXXXXXXXXXXXXXXXXXXXXC 420
RMVQPSP QIPMAQPLVPNLQQQ C
Sbjct: 361 VSRMVQPSPAAAAGAEHHHHHQIPMAQPLVPNLQQQFGGSSPWFASSPAAAAVAGGGFAC 420
Query: 421 PSMDSEXXXXXXLNAVLVPGSNENEMNYHGMFHVGGEGSSDGTSPSLPFSWQ 472
PSMDSE LNAVLVPGSNENEMNYHGMFHVGGEGSSDGTSPSLPFSWQ
Sbjct: 421 PSMDSEQQQQQQLNAVLVPGSNENEMNYHGMFHVGGEGSSDGTSPSLPFSWQ 472
>Os08g0531600 Similar to Squamosa-promoter binding-like protein 3
Length = 455
Score = 291 bits (744), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 214/498 (42%), Positives = 240/498 (48%), Gaps = 69/498 (13%)
Query: 1 MDWDLKMP--VSWDLAELEHNAVPNMXXXXXXXXXXXXXXXXSRGAPGRPECSVDLKLGG 58
M+WDLKMP SW+LA+ N+ + G GR ECSVDLKLGG
Sbjct: 1 MEWDLKMPPAASWELADELENSGGGGVPAAVSSSSAAVGGGVNAGGGGRQECSVDLKLGG 60
Query: 59 LGEFGXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXTSTLKRPRXXXXXXXXQCPSCAV 117
LGEFG ++ KRPR QCPSCAV
Sbjct: 61 LGEFGGGGAQPRVAVAGEPAKGKGPAAAATGAAAAASSAPAKRPRGAAAAGQQQCPSCAV 120
Query: 118 DGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRK 177
DGCK DLSK RDYHRRHKVCE HSKTP+VVVSGREMRFCQQCSRFHLL EFDEAKRSCRK
Sbjct: 121 DGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRK 180
Query: 178 RLDGHNRRRRKPQADSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSXXXX 237
RLDGHNRRRRKPQ D M+S S++ SQQG RF+ F PRPE SW G+IK+EE+PYY+
Sbjct: 181 RLDGHNRRRRKPQPDPMNSASYLASQQGARFSPFATPRPEASWTGMIKTEESPYYTHHQI 240
Query: 238 XXXVMTSRQPHFVGXXXXXXXXXXXXKEGRRFPFLHEGDQISFXXXXXX------XXXXT 291
+ +SRQ HFVG GRRFPFL EG+ ISF
Sbjct: 241 PLGI-SSRQQHFVGSTSDG---------GRRFPFLQEGE-ISFGTGAGAGGVPMDQAAAA 289
Query: 292 LEISVCQ---TTVV---AXXXXXXXXXNKMFSSDGLXXXXXXXXXXXXXXXXXQVXXXXX 345
SVCQ TV KMFS GL
Sbjct: 290 AAASVCQPLLKTVAPPPPPHGGGGSGGGKMFSDGGLTQVLDSDCALSLLSAPANSTAIDV 349
Query: 346 XXXXXXXXXXXXXXXXXRMVQPSPXXXXXXXXXXXXQIPMAQPLVPNLQ----------- 394
+VQP+ IPMAQPL+ LQ
Sbjct: 350 GGGRV-------------VVQPT------------EHIPMAQPLISGLQFGGGGGSSAWF 384
Query: 395 QQXXXXXXXXXXXXXXXXXXXXXXXCPSMDSEXXXXXXLNAVLVPGSNENEMNYHGMFHV 454
CP ++SE LN VL SN+NEMNY+GMFHV
Sbjct: 385 AARPHHQAATGAAATAVVVSTAGFSCPVVESE-----QLNTVL--SSNDNEMNYNGMFHV 437
Query: 455 GGEGSSDGTSPSLPFSWQ 472
GGEGSSDGTS SLPFSWQ
Sbjct: 438 GGEGSSDGTSSSLPFSWQ 455
>Os01g0922600 Similar to SBP-domain protein 4
Length = 311
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 83/121 (68%), Gaps = 17/121 (14%)
Query: 128 RDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRR 187
RDYHRRHKVCE HSKT VV V+G++ RFCQQCSRFHLLGEFDE KRSCRKRLDGHN+RRR
Sbjct: 5 RDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRR 64
Query: 188 KPQADSMSSGSFMTSQQG-TRFASF---------TPPRPEPSWPG-IIKSE-----ETPY 231
KPQ D ++ G+ + G RF S+ P+ E WP ++K+E + PY
Sbjct: 65 KPQPDPLNPGNLFANHHGAARFTSYPQIFSTAASMSPQ-ETKWPANVVKTEAADVFQEPY 123
Query: 232 Y 232
Y
Sbjct: 124 Y 124
>Os06g0703500 Similar to SBP-domain protein 5 (Fragment)
Length = 475
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 68/88 (77%)
Query: 111 QCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDE 170
Q C V+GCK DLS R+YHR+HKVCE HSK P V+VSG E RFCQQCSRFH L EFD+
Sbjct: 176 QSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQ 235
Query: 171 AKRSCRKRLDGHNRRRRKPQADSMSSGS 198
K+SCR+RL HN RRRKPQ +++S GS
Sbjct: 236 KKKSCRRRLSDHNARRRKPQQEAISFGS 263
>Os03g0833300 Similar to Squamosa-promoter binding-like protein 8
Length = 969
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 66/96 (68%)
Query: 113 PSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAK 172
P+C V+GC ADL+ RDYHRRHKVCE H+K VV RFCQQCSRFH L EFDE K
Sbjct: 150 PACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGK 209
Query: 173 RSCRKRLDGHNRRRRKPQADSMSSGSFMTSQQGTRF 208
RSCR+RL GHNRRRRK + + GS T + + +
Sbjct: 210 RSCRRRLAGHNRRRRKTRPEVAVGGSAFTEDKISSY 245
>Os04g0656500 Similar to Squamosa-promoter binding-like protein 3
Length = 416
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 113 PSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSG-REMRFCQQCSRFHLLGEFDEA 171
P C +GCKADLS + YHRRHKVCE HSK PVVV +G RFCQQCSRFHLL EFD+A
Sbjct: 183 PRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDA 242
Query: 172 KRSCRKRLDGHNRRRRK 188
K+SCRKRL HNRRRRK
Sbjct: 243 KKSCRKRLADHNRRRRK 259
>Os08g0509600 Similar to Squamosa-promoter binding-like protein 8
Length = 417
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 75/119 (63%), Gaps = 10/119 (8%)
Query: 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRS 174
C V+GC ADLS ++Y+ RHKVC HSK P VVV+G E RFCQQCSRFHLL EFD+ KRS
Sbjct: 104 CQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRS 163
Query: 175 CRKRLDGHNRRRRKPQADSMSSGSFMTSQQGT--RFASFT--------PPRPEPSWPGI 223
CR+RL GHN RRR+PQ S + + G RF SFT P +WP I
Sbjct: 164 CRRRLAGHNERRRRPQTPLASRYGRLAASVGEHRRFRSFTLDFSYPRVPSSVRNAWPAI 222
>Os02g0174100 SBP domain containing protein
Length = 251
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 63/84 (75%)
Query: 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRS 174
C V+GC +L +DYHR+H+VCE HSK P VVV+G+E RFCQQCSRFH L EFD+ KRS
Sbjct: 68 CQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRS 127
Query: 175 CRKRLDGHNRRRRKPQADSMSSGS 198
CR+RL HN RRRKPQ D S S
Sbjct: 128 CRRRLYDHNARRRKPQTDVFSYAS 151
>Os04g0551500 SBP domain containing protein
Length = 360
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Query: 113 PSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAK 172
P C V+GC L ++YHRRHKVCE H+K P VVV G E RFCQQCSRFH+L EFD+AK
Sbjct: 106 PRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAK 165
Query: 173 RSCRKRLDGHNRRRRKPQA-DSMSSGS 198
+SCR+RL GHN RRR+ A ++M+ GS
Sbjct: 166 KSCRRRLAGHNERRRRSNASEAMARGS 192
>Os02g0177300 Similar to Squamosa-promoter binding protein 1
Length = 458
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 64/81 (79%)
Query: 111 QCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDE 170
Q P C +GCKADLS + YHRRHKVC+ H+K V+ +G++ RFCQQCSRFH+L EFDE
Sbjct: 193 QPPRCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDE 252
Query: 171 AKRSCRKRLDGHNRRRRKPQA 191
AKRSCRKRL HNRRRRKP A
Sbjct: 253 AKRSCRKRLTEHNRRRRKPTA 273
>Os01g0292900 Similar to Squamosa-promoter binding-like protein 2
Length = 862
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 59/81 (72%)
Query: 113 PSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAK 172
P C VDGC +LS RDY++RHKVCE H+K+ VV + E RFCQQCSRFH L EFDE K
Sbjct: 105 PCCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGK 164
Query: 173 RSCRKRLDGHNRRRRKPQADS 193
+SCR RL HNRRRRK Q +
Sbjct: 165 KSCRSRLAQHNRRRRKVQVQA 185
>Os06g0659100 Similar to Squamosa-promoter binding protein 1
Length = 426
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 57/73 (78%)
Query: 111 QCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDE 170
Q P C +GCKADLS + YHRRHKVCE H+K VV SG++ RFCQQCSRFH+L EFDE
Sbjct: 177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDE 236
Query: 171 AKRSCRKRLDGHN 183
AKRSCRKRL HN
Sbjct: 237 AKRSCRKRLAEHN 249
>Os07g0505200 Similar to SBP-domain protein 6 (Fragment)
Length = 216
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRS 174
C V+ C DLS+ Y+RRHKVC+ HSK PVV+V+G RFCQQCSRFH L EFD+AKRS
Sbjct: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169
Query: 175 CRKRLDGHNRRRRKPQADS 193
CR+RL GHN RRRK AD+
Sbjct: 170 CRRRLAGHNERRRKSAADT 188
>Os09g0491532 Similar to Squamosa-promoter binding protein 2
Length = 323
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 52/68 (76%)
Query: 129 DYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRK 188
D H RHKVC H+K P+VVV+G E RFCQQCSRFH L EFD+ K+SCR+RL GHN RRRK
Sbjct: 18 DVHGRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRK 77
Query: 189 PQADSMSS 196
P +SS
Sbjct: 78 PTPGPLSS 85
>Os05g0408200 SBP domain containing protein
Length = 842
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRS 174
C V GC+AD+ + + YHRRH+VC + V++ G + R+CQQC +FH+L +FDE KRS
Sbjct: 171 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRS 230
Query: 175 CRKRLDGHN-RRRRKPQADSM 194
CR++L+ HN RRRRKP + +
Sbjct: 231 CRRKLERHNKRRRRKPDSKGI 251
>Os11g0496700
Length = 162
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 45/48 (93%)
Query: 114 SCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSR 161
+C+VDGC++DLS+ RDYHRRHKVCE H+KTPVVVV+G+E RFCQQCSR
Sbjct: 115 ACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCSR 162
>Os11g0496600
Length = 245
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 138 EPHSKTPVVVVSGREMRFCQQC-----SRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQAD 192
E ++ T V V + RF + FH L EFD+ K+SCRKRLDGHNRRRRKPQ D
Sbjct: 4 ENYANTTVSVNLNLQYRFSVHVLNMLRAIFHNLAEFDDGKKSCRKRLDGHNRRRRKPQHD 63
Query: 193 SMSSGSFMTSQQGTRFASF 211
+++ SF+ Q +F+ +
Sbjct: 64 ALNPRSFLPYHQANQFSVY 82
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,596,391
Number of extensions: 383804
Number of successful extensions: 977
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 18
Length of query: 472
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 367
Effective length of database: 11,553,331
Effective search space: 4240072477
Effective search space used: 4240072477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)