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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0139400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Squamosa-promoter binding-like protein 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.84 (0.0339) R2 : 0.417
β1 : -0.17 (0.129) R2dD : 0.00259 R2D : -0.0195
β2 : 1.44 (0.1) R2dC : 0.387 R2C : 0.303
β3 : -0.292 (0.137) R2dE : 0.0107 R2E : -0.0787
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.19 (0.536) R2dD*E : 0.0718 R2D*E : 0.0499
γ1 : -0.414 (0.0723) R2dN8 : 0.0547 R2N8 : 0.0247
σ : 0.625
deviance : 180.11
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_____
C
peak time of C : 9.62
E
wheather : humidity
threshold : 72
memory length : 678
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.67 0.625 4.83 -0.14 1.44 -0.319 -1.05 4.37 -0.39 9.68 72.44 701 -- --
196.28 0.658 4.79 0.12 1.25 -0.2 0.372 -- -0.31 9.23 72.44 701 -- --
180.11 0.625 4.84 -0.17 1.44 -0.292 -- 4.19 -0.414 9.62 72 678 -- --
195.6 0.651 4.78 0.146 1.29 -0.212 -- -- -0.288 9.32 85 124 -- --
255.56 0.745 4.86 0.0357 -- 0.967 -- 3.35 -0.31 -- 72.99 777 -- --
198.18 0.66 4.79 0.147 1.31 -- 0.268 -- -0.308 9.76 -- -- -- --
198.45 0.66 4.79 0.157 1.31 -- -- -- -0.308 9.79 -- -- -- --
263.74 0.756 4.84 0.178 -- 0.971 -- -- -0.298 -- 79 776 -- --
196.06 0.652 4.8 -- 1.31 -0.231 -- -- -0.366 9.23 85.92 99 -- --
300.14 0.81 4.83 0.144 -- -- -- -- -0.307 -- -- -- -- --
199.1 0.66 4.8 -- 1.31 -- -- -- -0.325 9.78 -- -- -- --
256.08 0.745 4.8 -- -- 1.01 -- -- -0.23 -- 87 719 -- --
300.69 0.809 4.83 -- -- -- -- -- -0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.45 temperature 30.0 270 < th dose independent rect. 4 9
3 170.14 temperature 30.0 30 < th dose independent rect. 8 18
17 172.90 temperature 30.0 90 < th dose independent rect. 20 17
18 173.07 temperature 15.0 10 > th dose independent rect. 8 18
32 174.31 radiation 1.0 270 < th dose dependent rect. 22 21
33 174.46 radiation 1.0 270 < th dose independent rect. 23 18
34 174.48 radiation 1.0 90 < th dose independent sin 2 NA
36 174.58 radiation 1.0 270 < th dose independent rect. 22 21
37 174.60 radiation 1.0 90 < th dose dependent sin 2 NA
39 174.67 radiation 1.0 270 < th dose dependent rect. 23 19
43 174.77 radiation 1.0 90 < th dose dependent rect. 2 17
51 174.97 temperature 30.0 90 < th dose independent rect. 20 21
53 175.05 radiation 1.0 90 < th dose independent rect. 2 17
59 175.25 atmosphere 1015.0 10 < th dose dependent rect. 2 18
60 175.31 radiation 30.0 720 > th dose dependent rect. 14 21
76 175.64 radiation 30.0 720 > th dose dependent sin 12 NA
77 175.64 radiation 30.0 30 < th dose dependent rect. 2 6
83 175.82 temperature 30.0 270 < th dose independent rect. 4 21
87 175.89 atmosphere 995.0 10 > th dose independent rect. 8 18
119 176.50 humidity 80.0 720 < th dose independent rect. 8 10
124 176.55 radiation 20.0 10 < th dose independent rect. 2 6
129 176.59 radiation 40.0 720 > th dose independent rect. 14 20
130 176.62 temperature 25.0 270 > th dose dependent sin 4 NA
138 176.69 wind 1.0 270 > th dose independent rect. 12 17
141 176.71 temperature 30.0 90 < th dose independent rect. 3 23
144 176.75 humidity 70.0 720 > th dose independent rect. 20 19
150 176.81 temperature 15.0 10 > th dose independent rect. 20 6
153 176.83 humidity 70.0 720 > th dose independent rect. 18 22
155 176.84 humidity 80.0 720 < th dose independent rect. 6 12
161 176.90 atmosphere 1000.0 270 > th dose independent rect. 5 7
163 176.92 humidity 70.0 10 > th dose independent rect. 2 6
178 177.04 radiation 40.0 720 > th dose independent sin 12 NA
188 177.11 atmosphere 995.0 270 > th dose dependent rect. 4 9
191 177.14 temperature 25.0 270 > th dose dependent rect. 24 16
205 177.24 humidity 80.0 720 < th dose independent sin 0 NA
223 177.32 temperature 30.0 10 < th dose dependent rect. 2 6
226 177.34 temperature 15.0 270 > th dose independent rect. 6 18
227 177.35 humidity 70.0 720 > th dose independent rect. 1 23
243 177.45 humidity 70.0 720 > th dose independent rect. 7 17
249 177.48 temperature 25.0 720 > th dose dependent rect. 2 8
275 177.64 humidity 70.0 720 > th dose independent rect. 20 23
290 177.70 humidity 70.0 720 > th dose independent rect. 9 23
291 177.70 temperature 30.0 270 < th dose dependent rect. 6 5
301 177.74 atmosphere 1015.0 270 < th dose independent rect. 12 17
324 177.92 radiation 30.0 720 > th dose dependent rect. 7 4
341 177.93 humidity 70.0 720 > th dose independent rect. 9 14
342 177.93 humidity 70.0 720 > th dose independent rect. 11 23
346 177.94 temperature 30.0 270 < th dose dependent rect. 7 3
348 177.96 temperature 15.0 270 > th dose independent rect. 17 7
360 178.00 humidity 70.0 720 > th dose independent no NA NA
364 178.02 humidity 70.0 720 > th dose independent rect. 7 23
367 178.03 humidity 90.0 720 < th dose dependent rect. 6 13
371 178.05 atmosphere 1010.0 30 < th dose independent rect. 2 6
376 178.07 radiation 30.0 270 < th dose independent rect. 19 16
381 178.08 humidity 90.0 720 < th dose dependent rect. 8 10
389 178.11 atmosphere 995.0 270 > th dose independent rect. 3 23
398 178.15 humidity 50.0 10 > th dose dependent rect. 2 6
407 178.18 humidity 70.0 720 > th dose independent rect. 15 23
427 178.23 radiation 40.0 720 > th dose independent rect. 8 2
445 178.25 humidity 90.0 720 < th dose dependent sin 23 NA
449 178.27 temperature 30.0 270 < th dose independent sin 4 NA
470 178.35 radiation 1.0 90 > th dose independent sin 2 NA
473 178.35 precipitation 0.1 10 < th dose independent rect. 8 18
474 178.35 precipitation 0.1 10 < th dose dependent rect. 8 18
475 178.36 wind 7.0 10 < th dose independent rect. 2 6
484 178.37 radiation 40.0 720 < th dose independent rect. 17 23
501 178.44 radiation 40.0 720 < th dose independent rect. 1 23
504 178.45 radiation 1.0 270 < th dose independent sin 5 NA
515 178.48 temperature 10.0 10 > th dose independent rect. 2 6
517 178.48 temperature 30.0 10 < th dose independent rect. 2 6
518 178.48 humidity 50.0 10 > th dose independent rect. 2 6
520 178.48 atmosphere 995.0 10 > th dose independent rect. 2 6
525 178.49 temperature 30.0 90 > th dose independent sin 1 NA
526 178.49 atmosphere 995.0 270 > th dose independent rect. 4 21
539 178.52 radiation 20.0 30 < th dose dependent rect. 2 12
587 178.59 humidity 50.0 720 > th dose dependent rect. 9 14
623 178.64 humidity 60.0 720 > th dose dependent rect. 7 17
632 178.69 radiation 1.0 90 > th dose independent rect. 6 7
637 178.70 wind 9.0 4320 < th dose independent rect. 3 6
725 178.83 humidity 70.0 720 < th dose independent rect. 14 23
732 178.85 radiation 1.0 270 < th dose independent rect. 24 7
751 178.87 radiation 1.0 270 < th dose dependent rect. 24 7
795 178.91 temperature 30.0 90 > th dose independent rect. 8 10
847 178.97 temperature 30.0 90 < th dose independent sin 1 NA
889 179.05 temperature 30.0 270 > th dose independent sin 4 NA
892 179.05 humidity 70.0 720 < th dose independent rect. 17 23
899 179.07 radiation 40.0 720 < th dose independent rect. 9 14
902 179.08 precipitation 0.1 10 < th dose independent rect. 2 6
903 179.08 precipitation 0.1 10 < th dose dependent rect. 2 6
922 179.14 temperature 25.0 720 > th dose independent rect. 6 4
928 179.15 humidity 70.0 720 < th dose independent no NA NA
993 179.17 humidity 70.0 720 > th dose independent rect. 22 23