Os06g0663500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SBP domain containing protein.
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Os06g0663500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SBP domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.59 | 0.213 | 10.1 | -0.599 | 0.184 | -1.47 | 0.137 | -0.0137 | 0.0736 | 23.8 | 19.4 | 7760 | -- | -- |
| 20.59 | 0.211 | 10.1 | -0.598 | 0.184 | -1.47 | 0.134 | -- | 0.0744 | 23.8 | 19.39 | 7716 | -- | -- |
| 20.66 | 0.212 | 10.1 | -0.601 | 0.185 | -1.47 | -- | -0.0279 | 0.0748 | 23.6 | 19.38 | 7716 | -- | -- |
| 20.66 | 0.212 | 10.1 | -0.602 | 0.185 | -1.46 | -- | -- | 0.0738 | 23.6 | 19.38 | 7716 | -- | -- |
| 22.76 | 0.222 | 10.1 | -0.601 | -- | -1.49 | -- | -0.0618 | 0.0761 | -- | 19.34 | 7785 | -- | -- |
| 49.15 | 0.329 | 9.99 | 0.416 | 0.211 | -- | 0.144 | -- | 0.458 | 23.8 | -- | -- | -- | -- |
| 49.23 | 0.329 | 9.99 | 0.411 | 0.21 | -- | -- | -- | 0.458 | 23.6 | -- | -- | -- | -- |
| 22.76 | 0.222 | 10.1 | -0.612 | -- | -1.48 | -- | -- | 0.0705 | -- | 19.32 | 7784 | -- | -- |
| 24.94 | 0.233 | 10 | -- | 0.205 | -1.06 | -- | -- | 0.211 | 23.4 | 19.63 | 4524 | -- | -- |
| 52.01 | 0.337 | 9.98 | 0.417 | -- | -- | -- | -- | 0.46 | -- | -- | -- | -- | -- |
| 53.68 | 0.343 | 10 | -- | 0.215 | -- | -- | -- | 0.412 | 23.7 | -- | -- | -- | -- |
| 26 | 0.237 | 10.1 | -- | -- | -0.902 | -- | -- | 0.138 | -- | 22 | 3864 | -- | -- |
| 56.59 | 0.351 | 9.99 | -- | -- | -- | -- | -- | 0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 2 | 19.04 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 3 | 19.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 5 | 19.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 13 | 19.77 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 23 | 19.79 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 18 |
| 29 | 19.80 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 51 | 19.83 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 79 | 19.86 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 93 | 19.86 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 94 | 19.86 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 97 | 19.87 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 101 | 19.87 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 105 | 19.87 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 109 | 19.88 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 149 | 19.89 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 161 | 19.90 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 21 |
| 175 | 19.91 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 15 | NA |
| 201 | 19.92 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 13 | NA |
| 205 | 19.92 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 228 | 19.92 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 231 | 19.93 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 237 | 19.93 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 258 | 19.93 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 265 | 19.94 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 287 | 19.94 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 352 | 19.96 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 416 | 19.99 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 439 | 19.99 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 444 | 19.99 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 19 |
| 477 | 20.00 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 483 | 20.00 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 1 | 10 |
| 489 | 20.00 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 529 | 20.01 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 7 | NA |
| 533 | 20.01 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 568 | 20.01 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 24 | 20 |
| 573 | 20.01 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 612 | 20.02 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 630 | 20.02 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 649 | 20.02 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 24 | 18 |
| 658 | 20.02 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 666 | 20.02 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 21 |
| 734 | 20.03 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 6 |
| 742 | 20.03 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 12 |
| 774 | 20.03 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 9 | 19 |
| 833 | 20.04 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 845 | 20.04 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 851 | 20.04 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 9 | 17 |
| 910 | 20.05 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 10 | 15 |
| 927 | 20.06 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 946 | 20.06 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 0 | NA |
| 969 | 20.06 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 10 | 13 |
| 984 | 20.07 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |