BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0663500 Os06g0663500|J065138J19
         (118 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0663500  SBP domain containing protein                       216   3e-57
Os02g0174100  SBP domain containing protein                        76   5e-15
Os06g0703500  Similar to SBP-domain protein 5 (Fragment)           73   6e-14

>Os06g0663500 SBP domain containing protein
          Length = 118

 Score =  216 bits (550), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 107/118 (90%), Positives = 107/118 (90%)

Query: 1   IVVFCIVAFLHLLLPETPCDQXXXXXXXXXXXSLRFAACLCRFDDFFCSILGLSRFHAPS 60
           IVVFCIVAFLHLLLPETPCDQ           SLRFAACLCRFDDFFCSILGLSRFHAPS
Sbjct: 1   IVVFCIVAFLHLLLPETPCDQILLLIVVINNNSLRFAACLCRFDDFFCSILGLSRFHAPS 60

Query: 61  EFDQEKRSCRRRLSDHNARRRKPQTDVFAFGSGTLPRSLFGNTLVTYINYKSQSQCCL 118
           EFDQEKRSCRRRLSDHNARRRKPQTDVFAFGSGTLPRSLFGNTLVTYINYKSQSQCCL
Sbjct: 61  EFDQEKRSCRRRLSDHNARRRKPQTDVFAFGSGTLPRSLFGNTLVTYINYKSQSQCCL 118



>Os02g0174100 SBP domain containing protein
          Length = 251

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 46/61 (75%), Gaps = 2/61 (3%)

Query: 54  SRFHAPSEFDQEKRSCRRRLSDHNARRRKPQTDVFAFGSGTLPRSLF--GNTLVTYINYK 111
           SRFHA SEFDQ+KRSCRRRL DHNARRRKPQTDVF++ S   P SL    N  ++++  K
Sbjct: 113 SRFHALSEFDQKKRSCRRRLYDHNARRRKPQTDVFSYASARPPSSLLFDDNRQISFVWNK 172

Query: 112 S 112
           +
Sbjct: 173 A 173



>Os06g0703500 Similar to SBP-domain protein 5 (Fragment)
          Length = 475

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 35/42 (83%)

Query: 54  SRFHAPSEFDQEKRSCRRRLSDHNARRRKPQTDVFAFGSGTL 95
           SRFH  +EFDQ+K+SCRRRLSDHNARRRKPQ +  +FGS  L
Sbjct: 225 SRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSRL 266



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.333    0.143    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,876,714
Number of extensions: 140527
Number of successful extensions: 412
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 149 (62.0 bits)