BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0497300 Os05g0497300|AK111755
(236 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0497300 Similar to Ethylene response factor 2 230 7e-61
Os01g0797600 Ethylene responsive element binding factor3 (O... 149 2e-36
Os02g0189600 Similar to Ethylene response factor 2 (Ethylen... 76 2e-14
Os04g0610400 Similar to AP2 domain containing protein RAP2.... 75 3e-14
Os05g0497200 Similar to Ethylene-responsive transcription f... 74 1e-13
Os04g0398000 Pathogenesis-related transcriptional factor an... 71 6e-13
Os03g0183000 Similar to AP2 domain containing protein RAP2.... 69 2e-12
Os02g0594300 Similar to Enhancer of shoot regeneration ESR1 69 3e-12
Os04g0669200 Similar to Ethylene response factor 2 (Ethylen... 69 4e-12
Os04g0399800 Similar to Ethylene-responsive transcription f... 68 4e-12
Os07g0669500 Similar to Branched silkless1 68 7e-12
Os02g0520000 67 1e-11
Os04g0546800 Pathogenesis-related transcriptional factor an... 65 3e-11
Os12g0168100 Similar to AP2 domain containing protein RAP2.... 65 3e-11
Os09g0287000 Similar to Ethylene-responsive transcription f... 65 6e-11
Os03g0341000 Similar to AP2 domain containing protein RAP2.... 64 8e-11
Os09g0286600 Pathogenesis-related transcriptional factor an... 64 9e-11
>Os05g0497300 Similar to Ethylene response factor 2
Length = 236
Score = 230 bits (586), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 132/236 (55%), Positives = 132/236 (55%)
Query: 1 MAPRTSDKTMSPXXXXXXXXXXXXXXXXXXXXXXXQHFRGVRKRPWGRYAAEIRDPAKKS 60
MAPRTSDKTMSP QHFRGVRKRPWGRYAAEIRDPAKKS
Sbjct: 1 MAPRTSDKTMSPAAAATGLALGVGGVAGAAAVGTGQHFRGVRKRPWGRYAAEIRDPAKKS 60
Query: 61 RVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFPYXXXXXXXXXXXXXXXXXTVESFGSD 120
RVWLGTFDT KAKTNFPY TVESFGSD
Sbjct: 61 RVWLGTFDTAEEAARAYDAAAREYRGAKAKTNFPYPNGAPAAGVNSGSSNSSTVESFGSD 120
Query: 121 VQAPMKAMPIPPSLELDLFHRXXXXXXXXXXXMRFPFEGYPVSHPYYFFGQXXXXXXXSG 180
VQAPMKAMPIPPSLELDLFHR MRFPFEGYPVSHPYYFFGQ SG
Sbjct: 121 VQAPMKAMPIPPSLELDLFHRAAAAAAAGAGGMRFPFEGYPVSHPYYFFGQAAAAAAASG 180
Query: 181 CRMLKIAPAPVTVAALAQXXXXXXXIVXXXXXXXXXXXXXXXXXXXXXNCPPPMEV 236
CRMLKIAPAPVTVAALAQ IV NCPPPMEV
Sbjct: 181 CRMLKIAPAPVTVAALAQSDSDSSSIVDLAPSPPAALAKKAIAFDLDLNCPPPMEV 236
>Os01g0797600 Ethylene responsive element binding factor3 (OsERF3)
Length = 235
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 37 HFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFPYX 96
H+RGVRKRPWGRYAAEIRDPAKKSRVWLGT+DT KAKTNFP+
Sbjct: 33 HYRGVRKRPWGRYAAEIRDPAKKSRVWLGTYDTAEEAARAYDAAAREFRGAKAKTNFPF- 91
Query: 97 XXXXXXXXXXXXXXXXTVESFGSDVQAPMKAMPIPPSLELDLFHRXXXXXXXXXXXMRFP 156
TV++ G VQ PM+AMP+PP+L+LDLFHR +RFP
Sbjct: 92 ASQSMVGCGGSPSSNSTVDTGGGGVQTPMRAMPLPPTLDLDLFHRAAAVTAVAGTGVRFP 151
Query: 157 FEGYPV----SHPYYFFGQ-XXXXXXXSGCRMLKIAPAPVTVAALAQ 198
F GYPV +HPY+F+ Q +G RM+K+AP PVTVAA+AQ
Sbjct: 152 FRGYPVARPATHPYFFYEQAAAAAAAEAGYRMMKLAP-PVTVAAVAQ 197
>Os02g0189600 Similar to Ethylene response factor 2 (Ethylene response factor
3)
Length = 199
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%)
Query: 37 HFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFP 94
FRGVRKRPWGRYAAEIRDPAKK+RVWLGT+D+ KAKTNFP
Sbjct: 15 RFRGVRKRPWGRYAAEIRDPAKKARVWLGTYDSAEDAARAYDAAARALRGAKAKTNFP 72
>Os04g0610400 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 222
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 38/57 (66%)
Query: 37 HFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNF 93
FRGVRKRPWGRYAAEIRDPA+K+RVWLGTFDT KAKTNF
Sbjct: 25 RFRGVRKRPWGRYAAEIRDPARKARVWLGTFDTAEAAARAYDSAALHFRGPKAKTNF 81
>Os05g0497200 Similar to Ethylene-responsive transcription factor 11
(Ethylene-responsive element binding factor 11)
(EREBP-11) (AtERF11)
Length = 189
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 38/57 (66%)
Query: 37 HFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNF 93
H+RGVRKRPWGRYAAEIRDP KK+RVWLGT+DT KA+TNF
Sbjct: 22 HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTYDTPVEAALAYDRAAVALRGVKARTNF 78
>Os04g0398000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 268
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 36 QHFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFP 94
+H+RGVR+RPWG++AAEIRDP K +RVWLGTFDT KAK NFP
Sbjct: 65 RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLNFP 123
>Os03g0183000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 334
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%)
Query: 36 QHFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFP 94
+HFRG+R+RPWG++AAEIRDP K +RVWLGTF+T KAK NFP
Sbjct: 109 RHFRGIRQRPWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFP 167
>Os02g0594300 Similar to Enhancer of shoot regeneration ESR1
Length = 345
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 36/58 (62%)
Query: 37 HFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFP 94
+RGVR+RPWGR+AAEIRDPA K R WLGTFDT +A+TNFP
Sbjct: 58 RYRGVRRRPWGRFAAEIRDPASKERRWLGTFDTAEQAACAYDVAARAMRGTRARTNFP 115
>Os04g0669200 Similar to Ethylene response factor 2 (Ethylene response factor
3)
Length = 190
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 38 FRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFP 94
+RGVRKRPWGR+AAEIRDPAK++RVWLGT+D+ A+TNFP
Sbjct: 15 YRGVRKRPWGRFAAEIRDPAKRARVWLGTYDSAEAAARAYDVAARNLRGPLARTNFP 71
>Os04g0399800 Similar to Ethylene-responsive transcription factor 12
(Ethylene-responsive element binding factor 12)
(EREBP-12) (AtERF12)
Length = 292
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 35/58 (60%)
Query: 38 FRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFPY 95
+ GVR+RPWGRYAAEIRDPA K R WLGTFDT +A+TNF Y
Sbjct: 52 YLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEEAAVAYDRAARSLRGARARTNFAY 109
>Os07g0669500 Similar to Branched silkless1
Length = 318
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 34/58 (58%)
Query: 38 FRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFPY 95
F GVR+RPWGRYAAEIRDP K R WLGTFDT +A+TNF Y
Sbjct: 58 FLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGAQARTNFVY 115
>Os02g0520000
Length = 239
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 34/58 (58%)
Query: 38 FRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFPY 95
+ GVR+RPWGRYAAEIRDPA K R WLGTFDT A+TNF Y
Sbjct: 40 YLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEEAAVAYDRAARTIRGAAARTNFAY 97
>Os04g0546800 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 318
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 36 QHFRGVRKRPWGRYAAEIRDPAKK-SRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFP 94
+H+RGVR+RPWG++AAEIRDPAK +RVWLGTFDT +A NFP
Sbjct: 151 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDTAEDAALAYDRAAYRMRGSRALLNFP 210
>Os12g0168100 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 341
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 36 QHFRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFP 94
+ +RGVR+RPWG++AAEIRDP K +RVWLGTFDT +AK NFP
Sbjct: 154 KRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEDAARAYDGAALRFRGSRAKLNFP 212
>Os09g0287000 Similar to Ethylene-responsive transcription factor 5
(Ethylene-responsive element binding factor 5) (EREBP-5)
(AtERF5)
Length = 250
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 34/54 (62%)
Query: 40 GVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNF 93
GVR+RPWGR+A+EIRDP K +RVWLGTFDT KA+TNF
Sbjct: 104 GVRQRPWGRWASEIRDPVKGARVWLGTFDTAVEAARAYDAEARRIHGHKARTNF 157
>Os03g0341000 Similar to AP2 domain containing protein RAP2.2 (Fragment)
Length = 243
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 36/57 (63%)
Query: 38 FRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNFP 94
+RG+R+RPWG++AAEIRDPAK +RVWLGTF T KAK NFP
Sbjct: 67 YRGIRRRPWGKWAAEIRDPAKGARVWLGTFATAEAAARAYDRAARRIRGTKAKVNFP 123
>Os09g0286600 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 225
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 34/56 (60%)
Query: 38 FRGVRKRPWGRYAAEIRDPAKKSRVWLGTFDTXXXXXXXXXXXXXXXXXXKAKTNF 93
+RG+R+RPWGR+A+EIRDP K RVWLGTFDT AKTNF
Sbjct: 107 YRGIRQRPWGRWASEIRDPVKGIRVWLGTFDTAEGAARAYDDEVRRIYGGNAKTNF 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,906,757
Number of extensions: 105814
Number of successful extensions: 271
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 25
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)