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Os09g0286600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9 (0.0377) R2 : 0.926
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.97 (0.093) R2dC : 0.991 R2C : 0.843
β3 : -3.04 (0.148) R2dE : 0.0782 R2E : -0.0648
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.164 (0.0808) R2dN8 : 0.000807 R2N8 : -0.000381
σ : 0.701
deviance : 226.45
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C
peak time of C : 10.7
E
wheather : temperature
threshold : 20.9
memory length : 108
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 18.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.14 0.689 9 -0.326 6.93 -3.02 -0.292 1.89 -0.168 10.7 20.9 112 18 18.4
217.5 0.687 9.03 -0.559 6.95 -2.92 -0.00233 -- -0.223 10.7 20.85 108 18 18.5
215.28 0.683 9 -0.33 6.93 -3.01 -- 1.82 -0.169 10.7 20.98 108 18 18.5
217.39 0.687 9.02 -0.596 6.95 -2.93 -- -- -0.237 10.7 20.9 107 18 18.5
1050.8 1.51 8.98 4.12 -- -9.39 -- 7.29 1.53 -- 11.34 739 10.2 15.1
403.06 0.941 9.14 -1.07 6.45 -- -0.383 -- -0.664 10.8 -- -- -- --
403.67 0.941 9.14 -1.09 6.45 -- -- -- -0.666 10.8 -- -- -- --
372.74 0.899 9.28 -0.809 -- -8.81 -- -- -0.455 -- -5.55 869 7.98 15.7
226.45 0.701 9 -- 6.97 -3.04 -- -- -0.164 10.7 20.9 108 18 18.5
2979.77 2.55 9.3 -1.22 -- -- -- -- -0.707 -- -- -- -- --
434.8 0.975 9.11 -- 6.46 -- -- -- -0.544 10.8 -- -- -- --
298.73 0.805 9.18 -- -- -10 -- -- -0.378 -- -18.18 909 6.67 17.1
3019.09 2.56 9.27 -- -- -- -- -- -0.571 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 220.50 temperature 20.0 90 > th dose dependent rect. 18 18
2 221.05 temperature 10.0 270 > th dose dependent rect. 16 20
15 233.65 temperature 10.0 270 > th dose dependent rect. 6 16
58 250.58 temperature 25.0 90 > th dose independent rect. 18 19
59 251.22 temperature 15.0 270 > th dose dependent rect. 5 6
81 255.65 temperature 25.0 270 > th dose independent rect. 16 20
98 258.20 temperature 25.0 90 > th dose dependent sin 9 NA
129 263.67 temperature 30.0 30 < th dose dependent rect. 1 17
166 268.45 radiation 1.0 270 > th dose independent rect. 16 21
178 269.04 temperature 10.0 270 > th dose dependent rect. 16 9
189 269.94 temperature 15.0 10 > th dose dependent rect. 7 18
224 274.12 temperature 20.0 10 > th dose dependent rect. 7 5
261 276.71 radiation 1.0 270 > th dose independent rect. 17 18
274 277.87 temperature 10.0 90 > th dose dependent rect. 18 7
286 278.94 temperature 25.0 90 < th dose independent rect. 23 19
319 281.83 temperature 20.0 90 > th dose dependent rect. 23 13
325 282.25 temperature 10.0 90 > th dose dependent rect. 18 9
355 283.92 radiation 1.0 270 < th dose independent rect. 21 21
365 284.75 wind 7.0 90 < th dose independent rect. 18 18
368 284.87 temperature 20.0 270 > th dose independent rect. 5 6
373 285.20 radiation 1.0 270 < th dose dependent rect. 21 21
378 285.40 temperature 20.0 10 > th dose dependent rect. 6 21
409 286.76 wind 7.0 270 < th dose independent rect. 16 19
411 286.92 temperature 30.0 90 < th dose dependent rect. 3 15
436 288.01 precipitation 0.1 270 < th dose independent rect. 16 19
437 288.01 precipitation 0.1 270 < th dose dependent rect. 16 19
481 289.49 atmosphere 995.0 90 > th dose dependent rect. 12 6
521 290.86 temperature 15.0 90 > th dose independent rect. 18 18
529 291.05 humidity 90.0 90 < th dose independent rect. 18 18
551 291.86 temperature 25.0 10 > th dose independent rect. 7 5
554 291.89 precipitation 0.1 90 < th dose independent rect. 18 18
555 291.89 precipitation 0.1 90 < th dose dependent rect. 18 18
568 292.38 temperature 10.0 90 > th dose independent rect. 12 6
570 292.38 atmosphere 1015.0 90 < th dose independent rect. 12 6
572 292.42 precipitation 0.1 270 < th dose independent rect. 15 22
573 292.42 precipitation 0.1 270 < th dose dependent rect. 15 22
584 292.69 atmosphere 995.0 90 > th dose independent rect. 18 18
587 292.74 radiation 10.0 43200 < th dose dependent rect. 19 7
592 293.06 temperature 30.0 10 < th dose independent rect. 12 6
605 293.35 wind 9.0 90 < th dose independent rect. 12 6
618 293.58 temperature 30.0 10 < th dose dependent rect. 22 20
637 293.83 precipitation 0.1 90 < th dose independent rect. 12 6
638 293.83 precipitation 0.1 90 < th dose dependent rect. 12 6
646 294.01 precipitation 0.1 270 < th dose independent rect. 6 15
647 294.01 precipitation 0.1 270 < th dose dependent rect. 6 15
673 294.74 wind 1.0 90 > th dose independent rect. 12 6
677 294.77 temperature 25.0 10 > th dose dependent rect. 3 9
688 295.05 wind 1.0 270 > th dose independent rect. 16 9
690 295.11 humidity 50.0 90 > th dose independent rect. 18 18
696 295.22 atmosphere 995.0 270 > th dose independent rect. 11 5
709 295.47 radiation 40.0 90 < th dose independent rect. 12 6
722 295.73 precipitation 0.1 270 < th dose independent rect. 16 9
723 295.73 precipitation 0.1 270 < th dose dependent rect. 16 9
733 295.86 temperature 10.0 270 > th dose independent rect. 16 19
734 295.87 wind 9.0 10 < th dose independent rect. 19 17
744 296.00 wind 1.0 90 > th dose independent rect. 18 7
784 296.99 radiation 1.0 270 > th dose independent rect. 5 6
788 297.13 radiation 40.0 270 < th dose independent rect. 13 2
791 297.15 temperature 25.0 270 > th dose independent rect. 5 19
804 297.23 temperature 25.0 90 > th dose independent rect. 6 21
823 297.51 temperature 30.0 90 < th dose independent rect. 13 5
866 298.44 temperature 10.0 10 > th dose independent rect. 12 7
868 298.44 atmosphere 1015.0 10 < th dose independent rect. 12 7
869 298.44 temperature 10.0 10 > th dose independent rect. 19 17
870 298.44 atmosphere 995.0 10 > th dose independent rect. 19 17
873 298.46 temperature 25.0 90 > th dose independent rect. 23 13
876 298.48 humidity 50.0 90 > th dose independent rect. 13 5
896 299.07 radiation 1.0 270 < th dose dependent sin 8 NA
904 299.18 wind 1.0 90 > th dose independent rect. 18 18
914 299.28 precipitation 0.1 10 < th dose independent rect. 12 7
916 299.28 precipitation 0.1 10 < th dose dependent rect. 12 7
930 299.56 atmosphere 995.0 10 > th dose dependent rect. 12 7
956 300.10 humidity 50.0 270 > th dose independent rect. 11 6
957 300.10 wind 9.0 270 < th dose independent rect. 16 9
969 300.35 wind 1.0 90 > th dose independent rect. 18 9
980 300.53 atmosphere 995.0 270 > th dose independent rect. 13 2
987 300.58 radiation 1.0 270 < th dose independent sin 9 NA
1000 300.73 atmosphere 995.0 270 > th dose independent rect. 1 15