Os04g0546800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os04g0546800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.6 | 0.71 | 13.2 | 0.114 | 2.22 | 1.41 | 0.199 | 1.99 | 0.2 | 23.2 | 74 | 1224 | -- | -- |
| 236.01 | 0.716 | 13.2 | 0.377 | 2.13 | 1.45 | -0.122 | -- | 0.272 | 23.2 | 74 | 1272 | -- | -- |
| 228.75 | 0.704 | 13.2 | 0.115 | 2.21 | 1.41 | -- | 1.92 | 0.202 | 23.2 | 74.28 | 1228 | -- | -- |
| 236.07 | 0.716 | 13.2 | 0.384 | 2.13 | 1.46 | -- | -- | 0.275 | 23.2 | 74.06 | 1272 | -- | -- |
| 393.41 | 0.929 | 13.2 | 0.312 | -- | 1.11 | -- | 0.157 | 0.115 | -- | 76 | 1577 | -- | -- |
| 298.79 | 0.81 | 13.2 | 0.152 | 1.9 | -- | -0.299 | -- | 0.0872 | 23 | -- | -- | -- | -- |
| 299.17 | 0.81 | 13.2 | 0.165 | 1.91 | -- | -- | -- | 0.0884 | 22.9 | -- | -- | -- | -- |
| 393.56 | 0.928 | 13.2 | 0.319 | -- | 1.11 | -- | -- | 0.117 | -- | 76 | 1577 | -- | -- |
| 239.94 | 0.721 | 13.2 | -- | 2.11 | 1.41 | -- | -- | 0.245 | 23.2 | 74 | 1275 | -- | -- |
| 525.07 | 1.07 | 13.2 | 0.206 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 299.88 | 0.81 | 13.2 | -- | 1.91 | -- | -- | -- | 0.07 | 23 | -- | -- | -- | -- |
| 396.23 | 0.93 | 13.2 | -- | -- | 1.1 | -- | -- | 0.0816 | -- | 76 | 1577 | -- | -- |
| 526.19 | 1.07 | 13.2 | -- | -- | -- | -- | -- | 0.0791 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.88 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 19 |
| 2 | 228.21 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 9 | NA |
| 5 | 229.40 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 22 | 230.54 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 29 | 231.07 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 35 | 231.51 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 12 |
| 39 | 231.57 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 41 | 231.58 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 44 | 231.73 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 70 | 232.44 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 16 |
| 81 | 232.59 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 119 | 233.57 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 121 | 233.60 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 2 | 13 |
| 133 | 233.72 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 153 | 234.03 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 160 | 234.08 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 181 | 234.35 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 202 | 234.68 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 221 | 234.85 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 238 | 235.04 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 1 | 19 |
| 270 | 235.29 | humidity | 90.0 | 1440 | < th | dose dependent | no | NA | NA |
| 310 | 235.51 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 386 | 235.84 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 430 | 236.12 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 469 | 236.32 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 493 | 236.43 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 507 | 236.50 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 514 | 236.53 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 519 | 236.54 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 532 | 236.61 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 547 | 236.66 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 550 | 236.67 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 558 | 236.69 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 598 | 236.86 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 608 | 236.87 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 5 | 16 |
| 627 | 236.89 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 635 | 236.89 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 637 | 236.89 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 651 | 236.90 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 687 | 236.96 | humidity | 50.0 | 1440 | > th | dose dependent | no | NA | NA |
| 702 | 237.02 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 768 | 237.25 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 808 | 237.41 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 819 | 237.45 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 859 | 237.59 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 911 | 237.82 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 933 | 237.87 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 952 | 237.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 992 | 238.13 | humidity | 70.0 | 1440 | < th | dose independent | no | NA | NA |