BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0616300 Os02g0616300|Os02g0616300
(137 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0616300 Stem cell self-renewal protein Piwi domain con... 286 2e-78
Os07g0188000 Similar to Argonaute 4 protein 109 5e-25
Os03g0449200 Stem cell self-renewal protein Piwi domain con... 106 4e-24
Os02g0672200 Similar to AGO1 homologous protein 105 1e-23
Os03g0682200 Similar to Argonaute-like protein (Fragment) 104 2e-23
Os02g0831600 AGO1 homologous protein 103 3e-23
Os03g0682600 Similar to Argonaute 4 protein 103 3e-23
Os04g0566500 Similar to Argonaute protein 101 2e-22
Os06g0729300 Similar to AGO1 homologous protein 100 4e-22
Os07g0471300 Similar to Argonaute 4 protein 90 5e-19
Os04g0615700 Argonaute and Dicer protein, PAZ domain contai... 82 2e-16
Os04g0615800 Stem cell self-renewal protein Piwi domain con... 80 4e-16
Os01g0275600 Similar to Argonaute 4 protein 78 2e-15
Os04g0151800 Argonaute and Dicer protein, PAZ domain contai... 78 2e-15
Os02g0169400 Similar to Argonaute 4 protein 76 6e-15
Os01g0275200 Argonaute and Dicer protein, PAZ domain contai... 75 2e-14
Os07g0265600 Stem cell self-renewal protein Piwi domain con... 65 2e-11
>Os02g0616300 Stem cell self-renewal protein Piwi domain containing protein
Length = 137
Score = 286 bits (733), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MEAAFAALPTKEALWENGWPLLFSLSVGEPKPAKRAKREEGNSRPTHYTVIFDENHFTAD 60
MEAAFAALPTKEALWENGWPLLFSLSVGEPKPAKRAKREEGNSRPTHYTVIFDENHFTAD
Sbjct: 1 MEAAFAALPTKEALWENGWPLLFSLSVGEPKPAKRAKREEGNSRPTHYTVIFDENHFTAD 60
Query: 61 GLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYLGKFGDGSSIRNEVSSELPEF 120
GLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYLGKFGDGSSIRNEVSSELPEF
Sbjct: 61 GLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYLGKFGDGSSIRNEVSSELPEF 120
Query: 121 LKVPKIADRVLGVMFYC 137
LKVPKIADRVLGVMFYC
Sbjct: 121 LKVPKIADRVLGVMFYC 137
>Os07g0188000 Similar to Argonaute 4 protein
Length = 1052
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 68/106 (64%), Gaps = 9/106 (8%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRPTHY V+ DEN F+AD LQ+LT+NLCY YARCTR+VS+VPP YYAHLAA R R Y
Sbjct: 948 QGTSRPTHYHVLHDENRFSADQLQMLTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYY 1007
Query: 100 --------LGKFGDGSSIRNEVSSELPEFLKVPKIADRVLGVMFYC 137
G G + + + P ++P+I + V VMFYC
Sbjct: 1008 DEPPAMDGASSVGSGGN-QAAAGGQPPAVRRLPQIKENVKDVMFYC 1052
>Os03g0449200 Stem cell self-renewal protein Piwi domain containing protein
Length = 482
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 67/98 (68%), Gaps = 5/98 (5%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRPTHY V++DEN+F +D +Q L HNLCY +ARCTR VS+VPP YYAHLAA RGR Y
Sbjct: 390 KGTSRPTHYHVLWDENNFRSDEVQQLIHNLCYTFARCTRPVSLVPPAYYAHLAAYRGRLY 449
Query: 100 LGKFGDGSSIRNEVSSELPEFLKVPKIADRVLGVMFYC 137
L + D + R +P +PK+ D V +MFYC
Sbjct: 450 LER-SDTTMYRVSPLQTVP----LPKLRDNVKRLMFYC 482
>Os02g0672200 Similar to AGO1 homologous protein
Length = 1082
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 67/116 (57%), Gaps = 20/116 (17%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRP HY V++DEN FTADGLQ LT+NLCY YARCTR+VSIVPP YYAHLAA R R Y
Sbjct: 969 QGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 1028
Query: 100 L-------GKFGDGSSIRNEVSSELP-----------EFLKVPKIADRVLGVMFYC 137
+ G G+ R LP +P + + V VMFYC
Sbjct: 1029 MEPDTSDSGSMASGAHTRG--GGPLPGARSTKPAGNVAVRPLPDLKENVKRVMFYC 1082
>Os03g0682200 Similar to Argonaute-like protein (Fragment)
Length = 935
Score = 104 bits (260), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/99 (52%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRPTHY V+ DEN F AD LQ LT+NL Y YARCTRAVSIVPP YYAHL A R R Y
Sbjct: 837 KGTSRPTHYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYY 896
Query: 100 LGKFGDGSSIRNEVSSELPEFLK-VPKIADRVLGVMFYC 137
+ + V++ K +P+I + V MFYC
Sbjct: 897 MEDEHSDQGSSSSVTTRTDRSTKPLPEIKENVKRFMFYC 935
>Os02g0831600 AGO1 homologous protein
Length = 1011
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 68/114 (59%), Gaps = 16/114 (14%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRP HY V++DEN+FTAD LQ+LT+NLCY YARCTR+VSIVPP YYAHLAA R R Y
Sbjct: 898 KGTSRPAHYHVLWDENNFTADALQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 957
Query: 100 L-------GKFGDGSSIRNEVSSELPEFLK---------VPKIADRVLGVMFYC 137
+ G +R +S + +P + D V VMFYC
Sbjct: 958 MEPDTSDSSSVVSGPGVRGPLSGSSTSRTRAPGGAAVKPLPALKDSVKRVMFYC 1011
>Os03g0682600 Similar to Argonaute 4 protein
Length = 895
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 70/109 (64%), Gaps = 14/109 (12%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G S PTHY V+FDEN+F+AD LQ LT++LCY YARCTR+VSIVPP+YYAHLAA+R R Y
Sbjct: 790 QGTSHPTHYYVLFDENNFSADALQTLTYHLCYTYARCTRSVSIVPPVYYAHLAASRARHY 849
Query: 100 L--GKFGDGSSI---------RNEVSSELPEFLKVPKIADRVLGVMFYC 137
L G D S RN+ + +P+I + V MFYC
Sbjct: 850 LEEGSLPDHGSSSASAAGGSRRNDRGVPVK---PLPEIKENVKQFMFYC 895
>Os04g0566500 Similar to Argonaute protein
Length = 322
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 69/117 (58%), Gaps = 23/117 (19%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRP HY V++DEN FTAD LQ LT+NLCY YARCTR+VSIVPP YYAHLAA R R Y
Sbjct: 210 QGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 269
Query: 100 L-------GKFGDGSSIRNEVSSELPEFLK------------VPKIADRVLGVMFYC 137
+ G G++ S LP ++ +P + + V VMFYC
Sbjct: 270 MEPETSDSGSMASGAA----TSRGLPPGVRSARVAGNVAVRPLPALKENVKRVMFYC 322
>Os06g0729300 Similar to AGO1 homologous protein
Length = 1038
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 65/112 (58%), Gaps = 16/112 (14%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRP HY V++DEN+FTAD LQ LT+NLCY YARCTR+VSIVPP YYAHLAA R R Y
Sbjct: 929 KGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 988
Query: 100 LGKFGDGSSIRNEVSSELPEFLK--------------VPKIADRVLGVMFYC 137
+ D S + S +P + D V VMFYC
Sbjct: 989 ME--SDSSDSGSMASGRGGGSSTSRSTRAAGGGAVRPLPALKDSVKNVMFYC 1038
>Os07g0471300 Similar to Argonaute 4 protein
Length = 718
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 12/102 (11%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRP+HY V+ D+N+FTAD LQ +T+NLCY+Y CTR+VSI PP+YYAH A R R Y
Sbjct: 625 KGTSRPSHYHVLRDDNNFTADQLQSVTNNLCYLYTSCTRSVSIPPPVYYAHKLAFRARFY 684
Query: 100 LGKF----GDGSSIRNEVSSELPEFLKVPKIADRVLGVMFYC 137
L + GD + + + +P+I + V MF+C
Sbjct: 685 LTQVPVAGGDPGAAKFQ--------WVLPEIKEEVKKSMFFC 718
>Os04g0615700 Argonaute and Dicer protein, PAZ domain containing protein
Length = 1034
Score = 81.6 bits (200), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
G SRPTHY + DE+ F +D LQ L +NLC+++ARCT+ VS+ P+YYA LAA RGR Y
Sbjct: 929 GTSRPTHYYSLLDEHGFASDDLQKLVYNLCFVFARCTKPVSLATPVYYADLAAYRGRLY 987
>Os04g0615800 Stem cell self-renewal protein Piwi domain containing protein
Length = 517
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 46/63 (73%)
Query: 37 KREEGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARG 96
K E G SRPTHY + DE+ F +D LQ L +NLC+++ARCT+ VS+ P+YYA LAA RG
Sbjct: 367 KGEVGTSRPTHYYSLLDEHGFASDDLQKLVYNLCFVFARCTKPVSLATPVYYADLAAYRG 426
Query: 97 RSY 99
R Y
Sbjct: 427 RLY 429
>Os01g0275600 Similar to Argonaute 4 protein
Length = 904
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 11/104 (10%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYL 100
G +RPTHY ++ DE F+AD LQ L H+L Y+Y R T A+S+V P+ YAHLAAA+ ++
Sbjct: 805 GTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFI 864
Query: 101 GKFGDGSSIRNE-------VSSELPEFLKVPKIADRVLGVMFYC 137
KF + S + S+ +PE +P++ ++V MF+C
Sbjct: 865 -KFDEMSETSSSHGGHTSAGSAPVPE---LPRLHNKVRSSMFFC 904
>Os04g0151800 Argonaute and Dicer protein, PAZ domain containing protein
Length = 911
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYL 100
G +RPTHY V+ DE F+ D LQ L H+L Y+Y R T A+S+V P+ YAHLAAA+ ++L
Sbjct: 812 GTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFL 871
Query: 101 GKFGDGSSIRNEV-------SSELPEFLKVPKIADRVLGVMFYC 137
KF D S + S +PE +P++ ++V MF+C
Sbjct: 872 -KFEDMSDASSSQGGHTSVGSVPVPE---LPRLHEKVRSSMFFC 911
>Os02g0169400 Similar to Argonaute 4 protein
Length = 876
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 6/107 (5%)
Query: 37 KREEGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARG 96
+ +G RP +Y V++DEN F A Q LT+ LCY A CT+++S+V P++YA L ++R
Sbjct: 770 RSTQGTKRPRYYHVLWDENDFLAGSFQELTNYLCYTSATCTQSISVVAPVHYARLLSSRA 829
Query: 97 RSYLG--KFGDGSSIRN----EVSSELPEFLKVPKIADRVLGVMFYC 137
R Y+ GD +S + E SS E + I D + G MF+C
Sbjct: 830 RCYIKPRSIGDSTSHTSLPSEEDSSAASETGSLLPIKDNLKGAMFFC 876
>Os01g0275200 Argonaute and Dicer protein, PAZ domain containing protein
Length = 619
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYL 100
G +RPTHY V+ DEN+FT D LQ L HNL Y+Y R T A+S V P+ YAHLAAA+ ++
Sbjct: 496 GTTRPTHYHVLHDENNFTPDDLQELVHNLSYVYQRSTTAISGVAPICYAHLAAAQVSQFV 555
Query: 101 GKFGDGSS 108
+ D +S
Sbjct: 556 -RLDDAAS 562
>Os07g0265600 Stem cell self-renewal protein Piwi domain containing protein
Length = 363
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYL 100
G SRPTHY V+ DE F D +Q L +L Y+Y R T A+S+V P+ YAHLAAA+ ++
Sbjct: 264 GTSRPTHYHVLLDEIGFLPDDVQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFM 323
Query: 101 GKFGDGSSI-------RNEVSSELPEFLKVPKIADRVLGVMFYC 137
KF + + + + +PE +P++ V MF+C
Sbjct: 324 -KFEEFAETSSGSGGVPSSSGAVVPE---LPRLHADVCSSMFFC 363
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,057,136
Number of extensions: 201965
Number of successful extensions: 628
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 17
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)