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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0682200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Argonaute-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0611) R2 : 0.0836
β1 : -0.392 (0.235) R2dD : 0.01 R2D : -0.0573
β2 : -- (--) R2dC : -- R2C : --
β3 : 71.4 (14.2) R2dE : 13.1 R2E : -11.9
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -291 (60.5) R2dD*E : 12 R2D*E : -13
γ1 : 0.0845 (0.104) R2dN8 : 0.00177 R2N8 : -0.0376
σ : 0.914
deviance : 385.06
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 79.9
memory length : 92
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0317
open length of G : 2.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
382.2 0.919 3.26 -0.421 0.173 71.8 0.589 -292 0.0843 10.9 79.96 91 0.0163 2.97
399.69 0.938 3.08 0.314 0.145 3.79 0.736 -- 0.0558 11.4 79.96 91 0.0163 2.97
383.4 0.912 3.26 -0.397 0.164 71.7 -- -292 0.0739 10.6 79.97 92 0.02 2.95
400.49 0.932 3.08 0.34 0.16 3.69 -- -- 0.0673 11.1 83.18 77 0.0709 3.03
385.06 0.914 3.26 -0.392 -- 71.4 -- -291 0.0845 -- 79.9 92 0.0317 2.95
413.86 0.954 3.09 0.347 0.135 -- 0.627 -- 0.0488 10.8 -- -- -- --
415.15 0.954 3.08 0.37 0.158 -- -- -- 0.0487 8.73 -- -- -- --
401.99 0.934 3.08 0.353 -- 3.64 -- -- 0.0698 -- 83.01 77 0.0666 3.07
403.6 0.936 3.09 -- 0.166 3.75 -- -- 0.0235 9.74 83 77 0.0498 3.07
416.57 0.954 3.09 0.37 -- -- -- -- 0.05 -- -- -- -- --
418.76 0.957 3.09 -- 0.16 -- -- -- 0.0075 8.55 -- -- -- --
405.23 0.938 3.09 -- -- 3.67 -- -- 0.0248 -- 83 77 0.05 3.08
420.19 0.957 3.1 -- -- -- -- -- 0.00891 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 382.76 humidity 80.0 90 < th dose dependent rect. 24 3
2 383.14 humidity 80.0 90 < th dose independent rect. 24 3
7 387.58 atmosphere 1005.0 10 > th dose dependent rect. 2 2
15 390.22 radiation 1.0 43200 < th dose dependent rect. 3 1
24 391.16 humidity 90.0 10 < th dose independent rect. 3 1
25 391.22 humidity 90.0 10 < th dose dependent rect. 3 1
32 391.44 temperature 20.0 30 < th dose independent rect. 1 3
35 391.55 radiation 10.0 720 < th dose dependent rect. 16 3
48 392.03 humidity 90.0 30 > th dose independent rect. 2 1
49 392.05 wind 1.0 30 < th dose independent rect. 2 1
50 392.06 wind 5.0 90 > th dose independent rect. 2 4
52 392.09 temperature 20.0 30 > th dose independent rect. 2 1
54 392.12 humidity 80.0 30 > th dose dependent rect. 2 1
56 392.14 wind 9.0 30 < th dose independent rect. 3 23
58 392.19 wind 5.0 90 > th dose dependent rect. 2 4
60 392.23 radiation 20.0 720 < th dose dependent rect. 16 11
62 392.30 temperature 20.0 30 > th dose dependent rect. 2 1
80 392.86 wind 3.0 30 < th dose dependent rect. 2 1
94 393.41 atmosphere 1000.0 30 > th dose independent rect. 2 1
95 393.53 temperature 25.0 10 < th dose dependent rect. 1 4
102 393.60 wind 7.0 30 > th dose independent rect. 21 1
106 393.60 wind 7.0 30 > th dose dependent rect. 21 1
119 393.69 temperature 10.0 30 > th dose independent rect. 2 1
121 393.69 temperature 30.0 30 < th dose independent rect. 2 1
122 393.69 humidity 50.0 30 > th dose independent rect. 2 1
126 393.69 atmosphere 1010.0 30 < th dose independent rect. 2 1
128 393.69 radiation 1.0 30 < th dose independent rect. 2 1
133 393.69 precipitation 0.1 30 < th dose independent rect. 2 1
135 393.69 temperature 10.0 30 > th dose independent rect. 3 23
136 393.69 radiation 1.0 30 < th dose dependent rect. 2 1
141 393.69 precipitation 0.1 30 < th dose dependent rect. 2 1
150 393.90 radiation 10.0 720 < th dose independent rect. 16 11
152 393.93 radiation 10.0 720 < th dose independent rect. 16 3
154 394.00 precipitation 0.1 90 < th dose independent rect. 14 11
155 394.00 precipitation 0.1 90 < th dose dependent rect. 14 11
156 394.09 atmosphere 1015.0 30 < th dose dependent rect. 2 1
168 394.35 precipitation 0.1 90 < th dose independent rect. 3 23
171 394.35 precipitation 0.1 90 < th dose dependent rect. 3 23
182 394.62 wind 9.0 10 > th dose independent rect. 21 14
185 394.62 wind 9.0 10 > th dose dependent rect. 21 14
190 394.74 wind 7.0 10 > th dose independent rect. 21 7
191 394.76 wind 9.0 1440 < th dose independent rect. 3 1
192 394.76 temperature 10.0 1440 > th dose independent rect. 3 1
195 394.76 temperature 30.0 1440 < th dose independent rect. 3 1
199 394.76 humidity 50.0 1440 > th dose independent rect. 3 1
208 394.76 atmosphere 995.0 1440 > th dose independent rect. 3 1
209 394.76 radiation 1.0 1440 < th dose independent rect. 3 1
234 394.76 temperature 10.0 1440 > th dose independent rect. 4 23
237 394.76 radiation 1.0 1440 < th dose dependent rect. 3 1
242 394.76 wind 7.0 10 > th dose dependent rect. 21 8
304 395.15 radiation 10.0 720 < th dose dependent rect. 16 1
307 395.22 wind 9.0 90 > th dose dependent rect. 18 4
309 395.38 precipitation 0.1 720 > th dose independent rect. 17 1
314 395.54 atmosphere 995.0 30 > th dose independent rect. 3 23
315 395.57 temperature 30.0 30 < th dose dependent rect. 2 1
322 395.67 humidity 90.0 720 > th dose independent rect. 17 1
352 395.85 precipitation 0.1 720 < th dose independent rect. 13 18
353 395.85 precipitation 0.1 720 < th dose dependent rect. 13 18
360 396.05 precipitation 0.1 720 < th dose independent rect. 3 23
361 396.05 precipitation 0.1 720 < th dose dependent rect. 3 23
388 396.27 temperature 10.0 90 > th dose dependent rect. 4 21
390 396.29 temperature 10.0 10 > th dose dependent rect. 4 21
429 396.61 wind 1.0 30 > th dose independent rect. 2 1
444 396.64 wind 9.0 90 > th dose independent rect. 18 4
446 396.68 precipitation 0.1 720 < th dose independent rect. 4 19
447 396.68 precipitation 0.1 720 < th dose dependent rect. 4 19
545 396.88 temperature 30.0 10 < th dose dependent rect. 1 21
677 397.63 precipitation 0.1 720 < th dose independent rect. 11 14
678 397.63 precipitation 0.1 720 < th dose dependent rect. 11 14
680 397.66 radiation 1.0 720 < th dose dependent rect. 11 8
697 397.78 wind 7.0 90 < th dose independent rect. 14 11
703 397.87 precipitation 0.1 720 < th dose independent rect. 13 10
706 397.87 precipitation 0.1 720 < th dose dependent rect. 13 10
721 398.04 wind 1.0 270 > th dose dependent rect. 24 1
725 398.05 temperature 30.0 10 < th dose dependent rect. 1 19
731 398.10 precipitation 0.1 270 > th dose independent rect. 8 11
737 398.17 temperature 10.0 90 > th dose independent rect. 14 11
738 398.17 temperature 10.0 90 > th dose independent rect. 1 13
739 398.17 atmosphere 995.0 90 > th dose independent rect. 1 13
740 398.17 atmosphere 1015.0 90 < th dose independent rect. 1 13
742 398.17 precipitation 0.1 270 > th dose dependent rect. 8 11
757 398.26 humidity 80.0 720 > th dose independent rect. 4 3
762 398.29 radiation 40.0 90 < th dose independent rect. 14 11
789 398.51 humidity 80.0 720 > th dose dependent rect. 17 1
791 398.52 precipitation 0.1 720 > th dose dependent rect. 17 1
802 398.55 temperature 30.0 10 < th dose dependent rect. 1 12
806 398.62 radiation 1.0 720 < th dose independent rect. 12 7
821 398.68 precipitation 0.1 270 < th dose independent rect. 1 23
822 398.68 precipitation 0.1 270 < th dose dependent rect. 1 23
851 398.82 radiation 1.0 720 < th dose dependent rect. 23 19
860 398.85 wind 9.0 90 < th dose independent rect. 1 13
889 399.00 wind 7.0 10 < th dose independent rect. 4 21
899 399.06 precipitation 0.1 720 > th dose dependent rect. 20 22
901 399.07 temperature 30.0 720 < th dose dependent rect. 17 1
916 399.18 radiation 10.0 43200 < th dose dependent rect. 21 5
918 399.21 precipitation 0.1 720 < th dose independent rect. 19 21
920 399.21 precipitation 0.1 720 < th dose dependent rect. 19 21
924 399.22 temperature 30.0 10 < th dose dependent rect. 9 20
953 399.44 precipitation 0.1 270 > th dose independent rect. 16 3
959 399.47 radiation 1.0 720 < th dose independent rect. 14 14
969 399.50 radiation 1.0 720 < th dose independent rect. 12 16