Os04g0566500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Argonaute protein.
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Os04g0566500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Argonaute protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.39 | 0.232 | 10.7 | 0.00414 | 0.494 | -1.22 | 0.0343 | 0.211 | 0.193 | 4.13 | 21.31 | 93 | -- | -- |
| 24.42 | 0.23 | 10.7 | -0.0237 | 0.494 | -1.21 | -0.0112 | -- | 0.183 | 4.07 | 21.32 | 93 | -- | -- |
| 24.39 | 0.23 | 10.7 | -0.0014 | 0.494 | -1.22 | -- | 0.181 | 0.191 | 4.11 | 21.33 | 93 | -- | -- |
| 24.41 | 0.23 | 10.7 | -0.0333 | 0.497 | -1.21 | -- | -- | 0.181 | 4.11 | 21.3 | 93 | -- | -- |
| 32.71 | 0.266 | 10.7 | 0.167 | -- | -1.66 | -- | 0.743 | 0.269 | -- | 22.59 | 118 | -- | -- |
| 48.11 | 0.325 | 10.7 | -0.291 | 0.961 | -- | 0.306 | -- | -0.0202 | 3.75 | -- | -- | -- | -- |
| 48.39 | 0.326 | 10.7 | -0.296 | 0.962 | -- | -- | -- | -0.022 | 3.73 | -- | -- | -- | -- |
| 33.02 | 0.268 | 10.7 | 0.0431 | -- | -1.61 | -- | -- | 0.23 | -- | 22.64 | 114 | -- | -- |
| 24.44 | 0.23 | 10.7 | -- | 0.492 | -1.22 | -- | -- | 0.187 | 4.12 | 21.27 | 93 | -- | -- |
| 99.59 | 0.466 | 10.7 | -0.256 | -- | -- | -- | -- | 0.00368 | -- | -- | -- | -- | -- |
| 50.7 | 0.333 | 10.7 | -- | 0.957 | -- | -- | -- | 0.011 | 3.74 | -- | -- | -- | -- |
| 33.06 | 0.268 | 10.7 | -- | -- | -1.59 | -- | -- | 0.223 | -- | 22.67 | 114 | -- | -- |
| 101.31 | 0.47 | 10.7 | -- | -- | -- | -- | -- | 0.0321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.80 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 28 | 24.75 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 30 | 24.85 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 49 | 25.52 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 53 | 25.61 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 78 | 26.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 81 | 26.16 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 176 | 27.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 177 | 27.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 179 | 27.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 207 | 27.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 234 | 27.98 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 235 | 27.98 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 241 | 28.08 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 253 | 28.13 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 260 | 28.16 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 264 | 28.17 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 276 | 28.26 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 289 | 28.32 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 294 | 28.34 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 299 | 28.38 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 304 | 28.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 310 | 28.46 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 311 | 28.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 317 | 28.48 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 318 | 28.49 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 319 | 28.49 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 342 | 28.60 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 345 | 28.61 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 347 | 28.61 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 12 |
| 358 | 28.64 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 360 | 28.64 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 368 | 28.66 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 371 | 28.66 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 8 |
| 373 | 28.67 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 19 |
| 382 | 28.68 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 384 | 28.68 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 390 | 28.69 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 393 | 28.69 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 398 | 28.70 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 403 | 28.71 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 405 | 28.71 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 418 | 28.72 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 441 | 28.75 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 6 | NA |
| 456 | 28.77 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 470 | 28.78 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 481 | 28.79 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 487 | 28.80 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 504 | 28.81 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 520 | 28.82 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 529 | 28.83 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 564 | 28.85 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 590 | 28.88 | temperature | 10.0 | 90 | > th | dose dependent | sin | 23 | NA |
| 602 | 28.89 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 615 | 28.89 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 655 | 28.92 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 656 | 28.92 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 690 | 28.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 716 | 28.96 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 15 | NA |
| 801 | 29.01 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 862 | 29.04 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 19 |
| 864 | 29.04 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 916 | 29.06 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 22 |
| 929 | 29.07 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 942 | 29.07 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 22 |
| 966 | 29.08 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 15 |
| 971 | 29.08 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 19 |