FiT-DB / Search/ Help/ Sample detail

Os01g0275600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Argonaute 4 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0158) R2 : 0.477
β1 : 0.722 (0.0578) R2dD : 0.186 R2D : 0.151
β2 : 0.665 (0.041) R2dC : 0.303 R2C : 0.284
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.159 (0.0337) R2dN8 : 0.0341 R2N8 : -0.00569
σ : 0.297
deviance : 40.13
__
_____
C
peak time of C : 18.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.47 0.272 13.5 0.764 0.997 0.628 0.106 0.496 0.204 15.6 0.04 114 -- --
34.18 0.272 13.5 0.78 0.982 0.625 -0.388 -- 0.206 15.6 0.0417 114 -- --
33.44 0.269 13.5 0.771 1 0.628 -- 0.445 0.208 15.7 0.04 123 -- --
34.59 0.274 13.5 0.78 0.999 0.625 -- -- 0.207 15.7 0.04 123 -- --
56.34 0.352 13.5 0.707 -- 0.236 -- 0.31 0.157 -- 0.04 123 -- --
40.13 0.297 13.5 0.722 0.665 -- -0.00628 -- 0.159 18.8 -- -- -- --
40.13 0.297 13.5 0.722 0.665 -- -- -- 0.159 18.8 -- -- -- --
56.81 0.353 13.5 0.72 -- 0.241 -- -- 0.162 -- 0.04851 11 -- --
50.7 0.333 13.5 -- 0.632 0.352 -- -- 0.102 16.4 0.04 123 -- --
63.23 0.372 13.5 0.707 -- -- -- -- 0.146 -- -- -- -- --
53.87 0.343 13.5 -- 0.656 -- -- -- 0.0784 18.8 -- -- -- --
70.47 0.392 13.5 -- -- 0.232 -- -- 0.0815 -- 0.04851 11 -- --
76.42 0.408 13.5 -- -- -- -- -- 0.0674 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.58 atmosphere 995.0 270 > th dose dependent rect. 17 10
5 29.13 temperature 10.0 270 > th dose dependent rect. 13 18
8 29.28 temperature 15.0 270 > th dose independent rect. 13 18
9 29.47 radiation 1.0 90 < th dose independent sin 12 NA
10 29.58 temperature 10.0 90 > th dose dependent rect. 15 17
12 29.67 radiation 10.0 30 < th dose dependent sin 12 NA
15 29.85 atmosphere 1015.0 270 < th dose dependent rect. 13 18
17 29.91 temperature 10.0 10 > th dose dependent rect. 15 18
19 29.93 wind 5.0 270 < th dose independent rect. 2 5
23 30.08 atmosphere 1015.0 90 < th dose dependent rect. 15 17
25 30.10 radiation 10.0 270 < th dose dependent rect. 17 10
28 30.13 temperature 15.0 270 > th dose independent rect. 7 6
40 30.25 precipitation 0.1 270 < th dose independent rect. 3 14
41 30.25 precipitation 0.1 270 < th dose dependent rect. 3 14
43 30.26 atmosphere 995.0 270 > th dose independent rect. 17 10
44 30.26 radiation 10.0 270 < th dose independent rect. 17 10
51 30.32 atmosphere 1010.0 270 < th dose independent rect. 13 18
54 30.35 wind 7.0 270 < th dose independent rect. 7 6
56 30.36 atmosphere 995.0 270 > th dose dependent rect. 7 19
57 30.37 humidity 50.0 270 > th dose independent rect. 17 10
61 30.42 temperature 30.0 270 < th dose independent rect. 17 10
64 30.46 humidity 70.0 270 > th dose independent rect. 17 10
65 30.47 radiation 1.0 270 > th dose independent rect. 7 6
69 30.49 wind 9.0 270 < th dose independent rect. 17 10
71 30.49 temperature 10.0 270 > th dose dependent rect. 2 5
72 30.50 precipitation 0.1 270 < th dose independent rect. 13 18
73 30.50 precipitation 0.1 270 < th dose dependent rect. 13 18
75 30.52 precipitation 0.1 270 < th dose independent rect. 2 5
76 30.52 precipitation 0.1 270 < th dose dependent rect. 2 5
88 30.56 precipitation 0.1 270 < th dose independent rect. 7 6
89 30.56 precipitation 0.1 270 < th dose dependent rect. 7 6
101 30.60 atmosphere 995.0 270 > th dose independent rect. 7 6
102 30.60 atmosphere 1015.0 270 < th dose independent rect. 7 6
108 30.62 radiation 1.0 90 > th dose independent sin 12 NA
109 30.62 atmosphere 1015.0 270 < th dose dependent rect. 12 10
111 30.63 temperature 10.0 270 > th dose independent rect. 17 10
115 30.63 temperature 10.0 270 > th dose independent rect. 3 14
116 30.63 atmosphere 1015.0 270 < th dose independent rect. 3 14
119 30.68 atmosphere 995.0 270 > th dose independent rect. 7 19
131 30.71 atmosphere 1000.0 270 > th dose dependent rect. 1 6
134 30.72 precipitation 0.1 270 < th dose independent rect. 17 10
135 30.72 precipitation 0.1 270 < th dose dependent rect. 17 10
136 30.72 radiation 1.0 270 < th dose dependent rect. 5 22
139 30.74 wind 9.0 270 < th dose independent rect. 7 19
140 30.74 temperature 10.0 270 > th dose dependent rect. 12 10
141 30.75 wind 9.0 270 < th dose independent rect. 13 18
158 30.80 temperature 10.0 270 > th dose independent rect. 2 5
160 30.80 temperature 30.0 270 < th dose independent rect. 2 5
161 30.80 humidity 50.0 270 > th dose independent rect. 2 5
163 30.80 atmosphere 995.0 270 > th dose independent rect. 2 5
164 30.80 atmosphere 1015.0 270 < th dose independent rect. 2 5
165 30.80 radiation 30.0 270 < th dose independent rect. 2 5
168 30.80 temperature 10.0 270 > th dose independent rect. 7 19
171 30.82 radiation 1.0 90 > th dose independent rect. 15 17
181 30.84 temperature 15.0 10 > th dose independent rect. 15 18
192 30.88 humidity 50.0 270 > th dose independent rect. 7 6
227 30.95 precipitation 0.1 270 < th dose independent rect. 7 19
230 30.95 precipitation 0.1 270 < th dose dependent rect. 7 19
233 30.96 wind 9.0 270 < th dose independent rect. 3 14
247 30.98 wind 1.0 270 > th dose independent rect. 1 6
257 31.00 wind 9.0 270 < th dose dependent rect. 2 5
262 31.01 wind 1.0 270 > th dose independent rect. 7 6
267 31.02 humidity 50.0 270 > th dose independent rect. 7 18
279 31.07 radiation 40.0 270 < th dose dependent rect. 2 5
293 31.11 radiation 1.0 270 < th dose independent rect. 6 21
324 31.18 wind 1.0 270 > th dose independent rect. 13 18
360 31.24 temperature 30.0 270 < th dose independent rect. 7 18
367 31.25 humidity 90.0 10 < th dose independent rect. 2 7
376 31.26 radiation 40.0 90 < th dose independent rect. 15 17
403 31.28 atmosphere 1000.0 270 > th dose dependent rect. 3 3
466 31.40 wind 9.0 270 < th dose dependent rect. 7 6
584 31.63 temperature 10.0 270 > th dose dependent rect. 7 5
614 31.70 atmosphere 1015.0 10 < th dose independent rect. 15 18
626 31.72 wind 1.0 270 > th dose independent rect. 7 18
629 31.72 humidity 50.0 270 > th dose dependent rect. 17 9
635 31.73 temperature 30.0 270 < th dose independent rect. 7 6
733 31.83 atmosphere 995.0 270 > th dose independent rect. 13 18
743 31.84 precipitation 0.1 10 < th dose independent rect. 15 18
750 31.84 precipitation 0.1 10 < th dose dependent rect. 15 18
785 31.89 atmosphere 1010.0 270 < th dose independent rect. 12 10
827 31.93 wind 1.0 270 > th dose independent rect. 3 3
843 31.94 humidity 90.0 10 < th dose independent rect. 14 19
864 31.97 radiation 1.0 270 > th dose independent rect. 11 20
889 32.00 wind 9.0 10 < th dose independent rect. 9 6
903 32.01 radiation 1.0 90 > th dose dependent rect. 17 14
909 32.02 atmosphere 995.0 10 > th dose independent rect. 9 7
926 32.04 atmosphere 995.0 90 > th dose independent rect. 15 17
973 32.07 atmosphere 995.0 90 > th dose dependent rect. 11 16
975 32.08 temperature 10.0 10 > th dose independent rect. 9 6
978 32.08 atmosphere 1015.0 10 < th dose independent rect. 9 6
979 32.08 precipitation 0.1 10 < th dose independent rect. 9 6
981 32.08 humidity 90.0 90 < th dose independent rect. 8 7
987 32.08 precipitation 0.1 10 < th dose dependent rect. 9 6