Os02g0672200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AGO1 homologous protein.
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Os02g0672200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AGO1 homologous protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.68 | 0.292 | 11.6 | -0.272 | 1.05 | 0.791 | -0.547 | 0.105 | -0.1 | 4.86 | 56.98 | 25 | -- | -- |
| 38.71 | 0.29 | 11.6 | -0.271 | 1.05 | 0.795 | -0.494 | -- | -0.1 | 4.87 | 56.81 | 24 | -- | -- |
| 39.28 | 0.292 | 11.6 | -0.263 | 1.06 | 0.775 | -- | -0.137 | -0.0947 | 4.83 | 57.05 | 24 | -- | -- |
| 39.33 | 0.292 | 11.6 | -0.268 | 1.06 | 0.768 | -- | -- | -0.0977 | 4.82 | 57.12 | 24 | -- | -- |
| 60.68 | 0.363 | 11.6 | -0.323 | -- | 1.5 | -- | -0.582 | -0.00683 | -- | 67.41 | 204 | -- | -- |
| 50.15 | 0.332 | 11.6 | -0.274 | 1.52 | -- | -0.192 | -- | -0.129 | 4.1 | -- | -- | -- | -- |
| 50.25 | 0.332 | 11.6 | -0.272 | 1.51 | -- | -- | -- | -0.128 | 4.09 | -- | -- | -- | -- |
| 60.99 | 0.364 | 11.6 | -0.285 | -- | 1.49 | -- | -- | -0.0016 | -- | 66.79 | 208 | -- | -- |
| 41.23 | 0.299 | 11.6 | -- | 1.05 | 0.773 | -- | -- | -0.0702 | 4.82 | 56.56 | 24 | -- | -- |
| 174.88 | 0.618 | 11.6 | -0.21 | -- | -- | -- | -- | -0.0875 | -- | -- | -- | -- | -- |
| 52.2 | 0.338 | 11.6 | -- | 1.51 | -- | -- | -- | -0.0976 | 4.09 | -- | -- | -- | -- |
| 63.1 | 0.37 | 11.6 | -- | -- | 1.49 | -- | -- | 0.0247 | -- | 66 | 206 | -- | -- |
| 176.05 | 0.619 | 11.6 | -- | -- | -- | -- | -- | -0.0642 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.38 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 2 | 36.64 | humidity | 60 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 17 | 37.26 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 33 | 37.60 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 38 | 37.65 | humidity | 80 | 10 | > th | dose independent | rect. | 5 | 17 |
| 40 | 37.66 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 65 | 38.05 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 18 |
| 67 | 38.06 | humidity | 70 | 30 | > th | dose dependent | sin | 23 | NA |
| 150 | 38.71 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 158 | 38.74 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 21 |
| 159 | 38.75 | humidity | 80 | 10 | > th | dose independent | sin | 0 | NA |
| 164 | 38.76 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 13 |
| 171 | 38.81 | humidity | 60 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 179 | 38.84 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 185 | 38.87 | radiation | 1 | 270 | < th | dose independent | sin | 1 | NA |
| 186 | 38.87 | humidity | 60 | 30 | > th | dose dependent | no | NA | NA |
| 187 | 38.87 | humidity | 90 | 30 | < th | dose dependent | sin | 1 | NA |
| 206 | 38.93 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 207 | 38.93 | humidity | 80 | 10 | > th | dose independent | rect. | 5 | 15 |
| 216 | 38.96 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 227 | 39.00 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 264 | 39.13 | humidity | 60 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 267 | 39.15 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 21 |
| 289 | 39.22 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 317 | 39.32 | humidity | 80 | 10 | < th | dose independent | sin | 0 | NA |
| 320 | 39.32 | humidity | 60 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 348 | 39.42 | radiation | 1 | 270 | < th | dose dependent | sin | 0 | NA |
| 359 | 39.47 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 17 |
| 367 | 39.49 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 368 | 39.50 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 372 | 39.50 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 382 | 39.51 | humidity | 90 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 410 | 39.58 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 411 | 39.58 | humidity | 60 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 464 | 39.71 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 477 | 39.74 | radiation | 1 | 270 | < th | dose independent | rect. | 2 | 19 |
| 513 | 39.81 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 515 | 39.81 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 588 | 39.95 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 621 | 40.02 | humidity | 80 | 10 | > th | dose independent | rect. | 5 | 13 |
| 629 | 40.03 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 670 | 40.10 | humidity | 90 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 714 | 40.16 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 817 | 40.33 | radiation | 1 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 850 | 40.38 | humidity | 60 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 870 | 40.43 | humidity | 80 | 10 | > th | dose independent | rect. | 5 | 11 |
| 913 | 40.47 | humidity | 90 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 958 | 40.55 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 11 |
| 987 | 40.58 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 23 |