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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0616300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Stem cell self-renewal protein Piwi domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.0175) R2 : 0.00138
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0293 (0.0369) R2dN8 : 0.00178 R2N8 : 0.00138
σ : 0.33
deviance : 50.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.61 0.321 2.79 0.0585 0.347 0.336 -1.77 -1.54 0.0655 11.9 0.7225 90 -- --
48.27 0.324 2.8 -0.0625 0.292 0.272 -0.267 -- 0.0528 11.6 0.1939 98 -- --
48.13 0.323 2.81 -0.0776 0.246 0.246 -- -0.173 0.0565 11.7 0.09125 98 -- --
47.98 0.323 2.81 -0.0359 0.308 0.305 -- -- 0.0351 11.8 0.08304 93 -- --
49.23 0.327 2.81 -0.0361 -- 0.084 -- -0.121 0.0318 -- 0.009921 125 -- --
49.6 0.33 2.81 -0.0587 0.0811 -- 0.103 -- 0.0214 3.98 -- -- -- --
49.63 0.33 2.81 -0.06 0.0821 -- -- -- 0.0208 4.12 -- -- -- --
49.26 0.327 2.81 -0.0419 -- 0.0882 -- -- 0.0282 -- 0.009936 134 -- --
48 0.323 2.8 -- 0.313 0.307 -- -- 0.0476 11.8 0.07991 93 -- --
50 0.33 2.81 -0.0567 -- -- -- -- 0.023 -- -- -- -- --
49.72 0.33 2.81 -- 0.0809 -- -- -- 0.0275 4.14 -- -- -- --
49.33 0.327 2.81 -- -- 0.0891 -- -- 0.0284 -- 0.004231 134 -- --
50.08 0.33 2.81 -- -- -- -- -- 0.0293 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.46 radiation 1 90 < th dose independent rect. 10 4
2 36.46 radiation 1 90 < th dose dependent rect. 10 4
25 36.85 radiation 1 10 < th dose independent rect. 13 1
35 36.85 radiation 1 10 < th dose dependent rect. 13 1
49 37.12 humidity 80 90 > th dose dependent rect. 12 1
50 37.19 humidity 80 90 > th dose independent rect. 12 1
79 38.50 radiation 1 10 < th dose dependent rect. 6 8
100 40.63 humidity 80 10 > th dose independent rect. 14 1
158 43.51 radiation 20 10 < th dose independent rect. 14 1
165 43.85 temperature 25 90 < th dose independent rect. 12 1
170 44.10 humidity 80 1440 > th dose independent rect. 23 2
174 44.14 humidity 80 1440 < th dose independent rect. 23 1
177 44.18 humidity 80 1440 < th dose dependent rect. 23 1
189 44.40 wind 7 1440 > th dose dependent rect. 18 1
190 44.42 humidity 70 10 > th dose dependent rect. 14 1
211 44.66 radiation 20 90 < th dose independent rect. 12 1
225 44.72 wind 7 1440 > th dose independent rect. 18 1
272 45.04 wind 7 1440 < th dose independent rect. 18 1
294 45.23 radiation 1 720 > th dose independent rect. 4 1
304 45.23 radiation 1 720 > th dose dependent rect. 4 1
337 45.33 radiation 20 10 < th dose independent rect. 12 3
346 45.37 wind 9 1440 > th dose dependent rect. 15 2
369 45.46 wind 5 10 > th dose independent rect. 13 1
403 45.64 radiation 1 90 < th dose dependent sin 1 NA
426 45.76 wind 9 1440 > th dose independent rect. 15 2
452 45.89 humidity 80 90 > th dose independent rect. 12 5
462 45.92 wind 9 1440 < th dose independent rect. 15 2
476 45.96 temperature 20 30 > th dose independent rect. 13 1
485 45.99 wind 9 1440 < th dose independent rect. 15 4
498 46.03 radiation 1 90 < th dose independent sin 1 NA
506 46.06 wind 5 90 > th dose independent rect. 13 1
512 46.09 radiation 1 90 > th dose independent sin 1 NA
548 46.23 temperature 30 90 < th dose dependent rect. 12 1
551 46.25 radiation 1 90 > th dose independent rect. 14 23
561 46.28 wind 9 1440 < th dose dependent rect. 18 3
567 46.30 wind 9 1440 < th dose dependent rect. 18 1
602 46.37 radiation 1 90 < th dose dependent rect. 3 11
605 46.38 radiation 1 90 < th dose dependent rect. 16 23
632 46.39 radiation 20 270 < th dose dependent rect. 11 18
645 46.44 radiation 1 90 < th dose dependent rect. 19 23
656 46.48 radiation 1 90 > th dose independent rect. 6 13
670 46.48 radiation 10 4320 < th dose dependent rect. 18 11
679 46.50 radiation 1 10 < th dose dependent sin 1 NA
682 46.51 radiation 1 10 < th dose independent rect. 4 10
684 46.51 radiation 1 90 < th dose independent rect. 19 23
685 46.51 atmosphere 1015 30 < th dose dependent rect. 13 1
687 46.51 radiation 40 4320 < th dose dependent rect. 18 9
708 46.54 radiation 1 90 < th dose dependent rect. 11 20
716 46.55 humidity 60 14400 < th dose dependent rect. 19 3
732 46.57 wind 9 10 < th dose independent rect. 13 1
733 46.57 humidity 60 14400 > th dose independent rect. 19 1
741 46.58 humidity 90 30 < th dose independent rect. 13 1
746 46.59 humidity 60 14400 < th dose independent rect. 19 1
759 46.60 radiation 1 90 < th dose independent rect. 16 23
765 46.60 humidity 90 14400 < th dose dependent rect. 19 5
784 46.61 radiation 1 90 < th dose independent rect. 3 11
786 46.61 radiation 1 90 < th dose dependent no NA NA
796 46.62 wind 1 90 > th dose dependent rect. 13 1
815 46.63 humidity 70 90 > th dose dependent rect. 12 5
832 46.65 humidity 80 14400 > th dose independent rect. 18 6
833 46.65 humidity 60 14400 > th dose independent rect. 19 8
857 46.67 humidity 50 14400 > th dose dependent rect. 19 9
873 46.69 wind 9 1440 < th dose independent rect. 15 10
877 46.69 radiation 30 4320 < th dose dependent rect. 18 7
881 46.70 atmosphere 1005 30 > th dose independent rect. 13 1
893 46.70 humidity 50 14400 > th dose dependent rect. 19 5
902 46.71 humidity 60 14400 > th dose independent rect. 19 5
911 46.71 radiation 1 90 < th dose independent rect. 11 20
931 46.72 wind 9 1440 < th dose independent rect. 15 15
940 46.72 radiation 30 4320 < th dose dependent rect. 18 3
941 46.72 wind 5 1440 < th dose dependent rect. 18 7
946 46.73 humidity 50 30 > th dose independent rect. 13 1
950 46.73 radiation 1 90 < th dose independent rect. 7 23
971 46.74 radiation 1 90 < th dose dependent rect. 3 14
1000 46.77 temperature 10 30 > th dose independent rect. 13 1