BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0616300 Os02g0616300|Os02g0616300
(137 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69440.1 | chr1:26101565-26105016 REVERSE LENGTH=991 109 5e-25
AT2G27880.1 | chr2:11871488-11876712 FORWARD LENGTH=998 107 2e-24
AT5G43810.1 | chr5:17611939-17616562 FORWARD LENGTH=989 105 6e-24
AT1G48410.2 | chr1:17886285-17891892 REVERSE LENGTH=1051 105 7e-24
AT2G27040.1 | chr2:11536795-11541503 REVERSE LENGTH=925 83 5e-17
AT5G21030.1 | chr5:7139892-7144272 REVERSE LENGTH=851 76 6e-15
AT1G31280.1 | chr1:11181777-11185112 FORWARD LENGTH=1015 74 2e-14
AT2G32940.1 | chr2:13972218-13976856 REVERSE LENGTH=879 72 1e-13
AT5G21150.1 | chr5:7193472-7198113 FORWARD LENGTH=897 72 1e-13
AT1G31290.1 | chr1:11188293-11192317 FORWARD LENGTH=1195 71 2e-13
>AT1G69440.1 | chr1:26101565-26105016 REVERSE LENGTH=991
Length = 990
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 71/102 (69%), Gaps = 4/102 (3%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRPTHY +++DEN FT+D LQ L +NLCY + RCT+ +SIVPP YYAHLAA RGR Y
Sbjct: 889 KGTSRPTHYHILWDENEFTSDELQRLVYNLCYTFVRCTKPISIVPPAYYAHLAAYRGRLY 948
Query: 100 LGKF--GDGSSIRNEVSSEL--PEFLKVPKIADRVLGVMFYC 137
+ + +G S+ S + P+ + +PK++D V +MFYC
Sbjct: 949 IERSSESNGGSMNPSSVSRVGPPKTIPLPKLSDNVKNLMFYC 990
>AT2G27880.1 | chr2:11871488-11876712 FORWARD LENGTH=998
Length = 997
Score = 107 bits (268), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/107 (55%), Positives = 69/107 (64%), Gaps = 15/107 (14%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRP HY V+ DEN FTAD LQ+LT+NLCY YARCT++VSIVPP YYAHLAA R R Y
Sbjct: 897 QGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYY 956
Query: 100 L-GKFGDGSSIR--------NEVSSELPEFLKVPKIADRVLGVMFYC 137
+ + DG S R +V S+L P I D V VMFYC
Sbjct: 957 MESEMSDGGSSRSRSSTTGVGQVISQL------PAIKDNVKEVMFYC 997
>AT5G43810.1 | chr5:17611939-17616562 FORWARD LENGTH=989
Length = 988
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 16/109 (14%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRP HY V++DEN+FTADG+Q LT+NLCY YARCTR+VSIVPP YYAHLAA R R Y
Sbjct: 885 QGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 944
Query: 100 L-----------GKFGDGSSIRNEVSSELPEFLKVPKIADRVLGVMFYC 137
L GK ++ +V + +P + + V VMFYC
Sbjct: 945 LEPEIMQDNGSPGKKNTKTTTVGDVGVK-----PLPALKENVKRVMFYC 988
>AT1G48410.2 | chr1:17886285-17891892 REVERSE LENGTH=1051
Length = 1050
Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 69/113 (61%), Gaps = 15/113 (13%)
Query: 40 EGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
+G SRP HY V++DEN+FTADGLQ LT+NLCY YARCTR+VSIVPP YYAHLAA R R Y
Sbjct: 938 QGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 997
Query: 100 L-------GKFGDGSSIRN----EVSSELPE----FLKVPKIADRVLGVMFYC 137
+ G GS R S+ P +P + + V VMFYC
Sbjct: 998 MEPETSDSGSMASGSMARGGGMAGRSTRGPNVNAAVRPLPALKENVKRVMFYC 1050
>AT2G27040.1 | chr2:11536795-11541503 REVERSE LENGTH=925
Length = 924
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 5/101 (4%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYL 100
G +RPTHY V++DE F+AD LQ L H+L Y+Y R T A+S+V P+ YAHLAAA+ +++
Sbjct: 825 GTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFM 884
Query: 101 GKFGDGSSIRNE---VSSELP-EFLKVPKIADRVLGVMFYC 137
KF D S + +++ P ++P++ D V MF+C
Sbjct: 885 -KFEDQSETSSSHGGITAPGPISVAQLPRLKDNVANSMFFC 924
>AT5G21030.1 | chr5:7139892-7144272 REVERSE LENGTH=851
Length = 850
Score = 75.9 bits (185), Expect = 6e-15, Method: Composition-based stats.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYL 100
G +RPTHY V++DE F D LQ L H+L Y+Y R T A+S+V P+ YAHLAAA+ + +
Sbjct: 751 GTTRPTHYHVLYDEIGFDTDQLQELVHSLSYVYQRSTTAISLVAPICYAHLAAAQMATAM 810
Query: 101 GKFGDGSSIRNE-----VSSELPEFLKVPKIADRVLGVMFYC 137
KF D S + + +P +PK+ V MF+C
Sbjct: 811 -KFEDMSETSSSHGGITTAGAVP-VPPMPKLNTNVASSMFFC 850
>AT1G31280.1 | chr1:11181777-11185112 FORWARD LENGTH=1015
Length = 1014
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
G S+PTHY ++DE FT+D +Q L +C+ + RCT+ VS+VPP+YYA + A RGR Y
Sbjct: 905 GTSKPTHYYTLWDELGFTSDQVQKLIFEMCFTFTRCTKPVSLVPPVYYADMVAFRGRMY 963
>AT2G32940.1 | chr2:13972218-13976856 REVERSE LENGTH=879
Length = 878
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 9/97 (9%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYL 100
G SRP HY V+ DE F+ D LQ L H+L Y+ R T A SIV P+ YAHLAAA+ +
Sbjct: 791 GTSRPAHYHVLLDEIGFSPDDLQNLIHSLSYVNQRSTTATSIVAPVRYAHLAAAQ----V 846
Query: 101 GKFGDGSSIRNEVSSELPEFLKVPKIADRVLGVMFYC 137
+F I + ++PE +P++ + V G MF+C
Sbjct: 847 AQFTKFEGISED--GKVPE---LPRLHENVEGNMFFC 878
>AT5G21150.1 | chr5:7193472-7198113 FORWARD LENGTH=897
Length = 896
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYL 100
G +RPTHY V++DE F D LQ L H+L Y+Y R T A+S+V P+ YAHLAAA+ + +
Sbjct: 797 GTTRPTHYHVLYDEIGFATDDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGTVM 856
Query: 101 G--KFGDGSSIRNEVSSELPEFLKV---PKIADRVLGVMFYC 137
+ + SS +++ P + V P++ + V MF+C
Sbjct: 857 KYEELSETSSSHGGITT--PGAVPVPPMPQLHNNVSTSMFFC 896
>AT1G31290.1 | chr1:11188293-11192317 FORWARD LENGTH=1195
Length = 1194
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 41 GNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSY 99
G S+PTHY V+ DE F ++ +Q L +LC+ + RCT+ V++VPP+ YA AA+RGR Y
Sbjct: 1085 GTSKPTHYYVLSDEIGFNSNQIQKLIFDLCFTFTRCTKPVALVPPVSYADKAASRGRVY 1143
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,111,366
Number of extensions: 120706
Number of successful extensions: 310
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 10
Length of query: 137
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 49
Effective length of database: 8,693,961
Effective search space: 426004089
Effective search space used: 426004089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)