Os04g0615800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Stem cell self-renewal protein Piwi domain containing protein.
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Os04g0615800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Stem cell self-renewal protein Piwi domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.7 | 0.582 | 6.37 | 3.04 | 1.5 | -1.48 | 1.07 | 3.54 | 0.354 | 10.7 | 20.58 | 1703 | -- | -- |
| 187.13 | 0.642 | 6.52 | 1.87 | 1.75 | -1.28 | 1.21 | -- | 0.012 | 11.1 | 20.58 | 1703 | -- | -- |
| 158.4 | 0.586 | 6.37 | 3.08 | 1.49 | -1.5 | -- | 3.53 | 0.361 | 10.7 | 20.54 | 1687 | -- | -- |
| 184.87 | 0.633 | 6.53 | 2.29 | 1.56 | -1.72 | -- | -- | 0.0656 | 10.6 | 20.5 | 1607 | -- | -- |
| 284.16 | 0.785 | 6.36 | 3.31 | -- | -1.6 | -- | 3.28 | 0.514 | -- | 21.39 | 2278 | -- | -- |
| 257.56 | 0.752 | 6.58 | 1.54 | 1.49 | -- | 1.2 | -- | -0.236 | 10.7 | -- | -- | -- | -- |
| 263.53 | 0.76 | 6.57 | 1.59 | 1.48 | -- | -- | -- | -0.232 | 10.8 | -- | -- | -- | -- |
| 296.95 | 0.803 | 6.52 | 2.22 | -- | -1.82 | -- | -- | 0.18 | -- | 20.6 | 804 | -- | -- |
| 286.87 | 0.793 | 6.58 | -- | 1.67 | -0.985 | -- | -- | -0.247 | 11 | 20.5 | 1607 | -- | -- |
| 399.31 | 0.934 | 6.61 | 1.56 | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
| 330.19 | 0.85 | 6.61 | -- | 1.47 | -- | -- | -- | -0.409 | 10.7 | -- | -- | -- | -- |
| 403.87 | 0.936 | 6.58 | -- | -- | -1.09 | -- | -- | -0.0759 | -- | 22.32 | 891 | -- | -- |
| 463.55 | 1 | 6.65 | -- | -- | -- | -- | -- | -0.413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 3 | 153.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 4 | 153.86 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 6 | 153.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 12 | 153.97 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 13 | 154.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 12 |
| 33 | 154.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 120 | 156.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 131 | 156.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 142 | 156.96 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 155 | 157.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 284 | 158.18 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 8 |
| 286 | 158.19 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 344 | 158.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 472 | 159.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 557 | 159.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 569 | 159.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 626 | 159.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 693 | 160.11 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 754 | 160.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 810 | 160.66 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 863 | 160.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 21 |
| 890 | 161.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 931 | 161.28 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 958 | 161.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 20 |