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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0682600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Argonaute 4 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0501) R2 : 0.00589
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.173 (0.105) R2dN8 : 0.0076 R2N8 : 0.00589
σ : 0.943
deviance : 408.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
384.11 0.921 2.93 1.1 0.243 -0.224 0.202 -3.25 0.0186 1.64 24.71 1483 -- --
397.34 0.928 3.02 0.244 0.248 -0.325 0.438 -- -0.0653 1.48 32.5 4140 -- --
384.27 0.913 2.93 1.1 0.243 -0.223 -- -3.26 0.0172 1.73 24.72 1479 -- --
396.46 0.927 2.99 0.139 0.219 -0.441 -- -- -0.0845 1.9 32.5 4114 -- --
387.74 0.917 2.93 1.1 -- -0.247 -- -3.24 0.0154 -- 24.7 1445 -- --
401.86 0.94 3.01 0.256 0.26 -- 0.325 -- -0.149 1.82 -- -- -- --
402.27 0.939 3.01 0.245 0.261 -- -- -- -0.151 1.94 -- -- -- --
399.49 0.931 2.99 0.147 -- -0.476 -- -- -0.0707 -- 32.43 4105 -- --
396.89 0.928 3 -- 0.236 -0.461 -- -- -0.0915 2.08 32.1 4102 -- --
406.39 0.942 3.01 0.256 -- -- -- -- -0.145 -- -- -- -- --
403.85 0.94 3.01 -- 0.266 -- -- -- -0.178 1.96 -- -- -- --
399.92 0.931 2.99 -- -- -0.507 -- -- -0.0807 -- 32.1 4074 -- --
408.12 0.943 3.01 -- -- -- -- -- -0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 377.19 wind 1.0 90 < th dose dependent rect. 13 2
3 377.26 wind 1.0 1440 < th dose dependent rect. 4 2
7 378.77 humidity 90.0 90 > th dose independent rect. 7 2
9 379.16 humidity 80.0 90 > th dose dependent rect. 7 2
13 380.01 wind 1.0 90 < th dose independent rect. 13 1
17 381.07 temperature 25.0 4320 < th dose independent rect. 2 1
23 381.82 precipitation 0.1 90 > th dose independent rect. 22 3
24 381.82 precipitation 0.1 90 > th dose dependent rect. 22 3
29 382.04 wind 1.0 1440 < th dose independent rect. 4 2
33 382.33 temperature 30.0 10 > th dose independent rect. 14 1
40 383.05 wind 1.0 10 < th dose independent rect. 23 1
45 383.05 wind 1.0 10 < th dose dependent rect. 23 1
60 383.37 temperature 25.0 1440 < th dose independent rect. 11 19
66 383.46 wind 5.0 10 > th dose independent rect. 10 1
70 383.46 wind 5.0 10 > th dose dependent rect. 10 1
95 383.67 temperature 25.0 1440 < th dose independent rect. 13 15
100 383.70 wind 1.0 10 < th dose independent rect. 8 1
104 383.70 wind 1.0 10 < th dose dependent rect. 8 1
108 383.72 humidity 90.0 90 > th dose dependent rect. 6 8
110 383.80 wind 7.0 90 > th dose dependent rect. 8 1
113 383.83 wind 1.0 1440 > th dose independent rect. 4 2
117 383.86 wind 9.0 90 > th dose dependent rect. 21 13
118 383.88 wind 9.0 90 > th dose dependent rect. 19 15
128 384.10 wind 7.0 90 > th dose independent rect. 8 1
130 384.15 wind 7.0 10 < th dose independent rect. 13 7
139 384.34 wind 9.0 30 < th dose dependent rect. 13 7
143 384.43 wind 1.0 1440 < th dose dependent rect. 4 12
154 384.66 wind 1.0 1440 < th dose independent rect. 4 12
158 384.69 temperature 25.0 1440 < th dose independent rect. 23 19
162 384.72 temperature 25.0 4320 > th dose independent rect. 23 1
177 384.92 temperature 25.0 1440 < th dose independent rect. 23 22
178 384.93 precipitation 0.1 10 < th dose independent rect. 20 17
179 384.93 precipitation 0.1 10 < th dose dependent rect. 20 17
185 384.99 atmosphere 1015.0 30 < th dose dependent rect. 13 7
187 385.05 temperature 25.0 4320 < th dose independent rect. 22 5
190 385.09 wind 1.0 1440 < th dose independent rect. 4 15
198 385.18 temperature 25.0 4320 < th dose independent rect. 23 1
210 385.32 temperature 25.0 1440 < th dose independent sin 16 NA
213 385.35 wind 1.0 90 < th dose independent rect. 6 4
223 385.44 temperature 25.0 1440 > th dose independent rect. 16 1
225 385.45 wind 1.0 1440 > th dose independent rect. 4 15
227 385.46 temperature 25.0 1440 > th dose independent rect. 15 3
229 385.48 temperature 25.0 1440 < th dose independent rect. 16 1
240 385.53 temperature 25.0 1440 < th dose independent rect. 20 22
242 385.54 temperature 30.0 270 < th dose dependent rect. 15 13
243 385.54 wind 1.0 1440 < th dose dependent rect. 4 15
245 385.57 precipitation 0.1 1440 < th dose independent rect. 24 4
247 385.57 precipitation 0.1 1440 < th dose dependent rect. 24 4
258 385.64 precipitation 0.1 1440 > th dose independent rect. 24 4
279 385.73 atmosphere 1005.0 30 > th dose dependent rect. 7 1
284 385.75 wind 1.0 1440 > th dose independent rect. 4 12
291 385.79 humidity 90.0 90 > th dose independent rect. 6 8
311 385.80 wind 1.0 720 < th dose dependent rect. 12 19
315 385.83 temperature 25.0 1440 > th dose independent rect. 11 19
319 385.85 temperature 25.0 1440 > th dose independent rect. 11 17
337 385.94 temperature 15.0 10 > th dose dependent rect. 13 14
339 385.95 temperature 25.0 1440 < th dose independent rect. 11 10
342 385.96 temperature 25.0 1440 < th dose independent no NA NA
349 385.96 temperature 30.0 270 < th dose dependent rect. 8 20
350 385.96 temperature 20.0 10 > th dose dependent rect. 13 21
352 385.97 temperature 25.0 1440 < th dose independent rect. 5 23
357 385.98 temperature 15.0 90 > th dose dependent rect. 12 22
358 385.99 precipitation 0.1 1440 > th dose dependent rect. 23 5
365 386.02 humidity 70.0 90 < th dose dependent rect. 18 2
376 386.03 temperature 25.0 4320 > th dose independent rect. 22 3
381 386.06 temperature 25.0 1440 < th dose independent rect. 13 23
394 386.08 wind 1.0 1440 < th dose dependent rect. 9 22
395 386.09 temperature 25.0 1440 < th dose independent rect. 13 8
409 386.15 humidity 90.0 90 < th dose independent rect. 12 8
425 386.21 humidity 70.0 90 < th dose independent rect. 18 2
449 386.24 temperature 25.0 1440 > th dose independent rect. 11 8
455 386.27 temperature 25.0 30 > th dose independent rect. 13 7
470 386.29 radiation 1.0 270 < th dose dependent rect. 5 2
482 386.32 wind 1.0 1440 < th dose dependent rect. 4 19
489 386.35 temperature 30.0 90 < th dose dependent rect. 19 11
492 386.37 temperature 30.0 1440 < th dose dependent rect. 16 2
498 386.38 temperature 25.0 270 > th dose independent rect. 12 19
508 386.43 temperature 25.0 1440 > th dose independent rect. 23 20
514 386.44 temperature 25.0 1440 < th dose independent rect. 2 23
519 386.46 radiation 1.0 270 < th dose independent rect. 5 2
527 386.50 temperature 20.0 10 > th dose dependent rect. 13 19
570 386.63 wind 1.0 10 < th dose independent rect. 14 11
580 386.66 humidity 60.0 90 > th dose dependent rect. 23 11
622 386.79 precipitation 0.1 1440 > th dose independent rect. 3 1
635 386.84 humidity 50.0 10 > th dose independent rect. 13 7
659 386.91 precipitation 0.1 10 < th dose independent rect. 20 10
662 386.91 precipitation 0.1 10 < th dose dependent rect. 20 10
674 386.94 temperature 25.0 270 < th dose independent rect. 10 18
677 386.94 precipitation 0.1 1440 > th dose dependent rect. 3 1
686 386.97 temperature 25.0 1440 > th dose independent sin 18 NA
690 386.97 temperature 20.0 90 > th dose dependent rect. 18 15
706 387.00 wind 1.0 270 < th dose independent rect. 23 18
732 387.05 temperature 20.0 1440 > th dose dependent rect. 11 16
773 387.12 temperature 15.0 4320 > th dose independent rect. 11 2
780 387.13 precipitation 0.1 1440 < th dose independent rect. 3 1
785 387.13 precipitation 0.1 1440 < th dose dependent rect. 3 1
791 387.14 temperature 20.0 1440 > th dose dependent rect. 15 3
796 387.16 wind 1.0 1440 < th dose independent rect. 4 20
798 387.16 temperature 10.0 270 > th dose dependent rect. 21 11
821 387.22 wind 1.0 1440 > th dose independent sin 23 NA
829 387.25 wind 1.0 1440 < th dose independent sin 23 NA
848 387.28 wind 1.0 720 < th dose dependent rect. 22 9
851 387.29 wind 1.0 270 < th dose independent rect. 23 15
886 387.36 wind 1.0 1440 < th dose dependent rect. 2 21
903 387.40 wind 1.0 1440 > th dose independent rect. 4 20
940 387.49 radiation 1.0 30 < th dose dependent rect. 7 1
979 387.54 temperature 25.0 1440 < th dose dependent rect. 10 17