Os06g0729300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AGO1 homologous protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0729300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to AGO1 homologous protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.19 | 0.343 | 10.9 | 2.74 | 1.06 | -2.33 | -0.658 | -8.85 | 0.272 | 20 | 17.64 | 4746 | -- | -- |
| 57.57 | 0.353 | 11.1 | 3.15 | 1.12 | 1.36 | -0.861 | -- | 0.319 | 20.2 | 16.34 | 9548 | -- | -- |
| 54.42 | 0.344 | 10.9 | 2.76 | 1.06 | -2.33 | -- | -8.89 | 0.269 | 20 | 17.5 | 4683 | -- | -- |
| 56.43 | 0.35 | 11 | 3.03 | 1.05 | 1.61 | -- | -- | 0.297 | 19.9 | 15.46 | 8911 | -- | -- |
| 115.21 | 0.5 | 10.9 | 2.76 | -- | -2.16 | -- | -8.47 | 0.259 | -- | 17.48 | 4490 | -- | -- |
| 76.31 | 0.41 | 11.1 | 2.43 | 1.06 | -- | -0.697 | -- | 0.133 | 19.9 | -- | -- | -- | -- |
| 77.73 | 0.413 | 11.1 | 2.45 | 1.06 | -- | -- | -- | 0.133 | 19.9 | -- | -- | -- | -- |
| 116.45 | 0.503 | 11 | 3 | -- | 1.68 | -- | -- | 0.269 | -- | 15.26 | 8832 | -- | -- |
| 235.99 | 0.719 | 11.1 | -- | 1.04 | 0.0146 | -- | -- | -0.14 | 20.1 | 15.46 | 8911 | -- | -- |
| 138.88 | 0.551 | 11 | 2.44 | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
| 235.99 | 0.719 | 11.1 | -- | 1.04 | -- | -- | -- | -0.14 | 20.1 | -- | -- | -- | -- |
| 170.41 | 0.608 | 11.2 | -- | -- | -1.8 | -- | -- | -0.691 | -- | 37.98 | 47520 | -- | -- |
| 295.8 | 0.803 | 11.1 | -- | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 2 | 47.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 3 | 47.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 6 | 48.36 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 8 | 48.40 | temperature | 15 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 12 | 48.49 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 17 | 48.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 24 | 48.69 | temperature | 15 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 26 | 48.71 | temperature | 15 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 27 | 48.72 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 28 | 48.75 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 18 |
| 33 | 48.80 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 41 | 48.87 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 16 |
| 51 | 48.93 | temperature | 15 | 14400 | < th | dose independent | sin | 0 | NA |
| 101 | 49.22 | temperature | 15 | 14400 | > th | dose independent | sin | 23 | NA |
| 127 | 49.34 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 154 | 49.50 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 157 | 49.50 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 159 | 49.51 | temperature | 15 | 14400 | < th | dose independent | sin | 17 | NA |
| 187 | 49.55 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 207 | 49.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 211 | 49.61 | temperature | 15 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 217 | 49.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 225 | 49.63 | temperature | 15 | 14400 | < th | dose independent | no | NA | NA |
| 254 | 49.67 | temperature | 15 | 14400 | > th | dose independent | sin | 18 | NA |
| 275 | 49.71 | temperature | 15 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 282 | 49.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 289 | 49.72 | temperature | 15 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 375 | 49.95 | temperature | 15 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 392 | 50.00 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 19 |
| 437 | 50.11 | temperature | 15 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 445 | 50.12 | temperature | 15 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 516 | 50.25 | humidity | 50 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 541 | 50.32 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 555 | 50.37 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 589 | 50.42 | temperature | 15 | 14400 | < th | dose dependent | sin | 2 | NA |
| 643 | 50.60 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 689 | 50.67 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 725 | 50.73 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 747 | 50.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 19 |
| 753 | 50.79 | temperature | 15 | 14400 | < th | dose dependent | rect. | 12 | 22 |
| 757 | 50.80 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 758 | 50.80 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 763 | 50.81 | temperature | 15 | 14400 | < th | dose dependent | no | NA | NA |
| 772 | 50.83 | temperature | 15 | 14400 | > th | dose independent | no | NA | NA |
| 785 | 50.83 | temperature | 15 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 821 | 50.86 | temperature | 15 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 833 | 50.87 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 17 |
| 836 | 50.87 | temperature | 15 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 958 | 50.97 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 19 |
| 966 | 50.98 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 969 | 50.98 | temperature | 15 | 14400 | < th | dose dependent | sin | 17 | NA |
| 971 | 50.98 | humidity | 50 | 14400 | < th | dose dependent | rect. | 9 | 1 |