Os07g0265600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Stem cell self-renewal protein Piwi domain containing protein.
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Os07g0265600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Stem cell self-renewal protein Piwi domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.26 | 0.227 | 9.54 | -0.33 | 0.794 | -0.475 | -0.904 | 1.31 | 0.218 | 15.2 | 1 | 719 | -- | -- |
| 24.4 | 0.232 | 9.54 | -0.403 | 0.664 | -0.11 | -0.456 | -- | 0.192 | 13.1 | 1.63 | 485 | -- | -- |
| 23.49 | 0.226 | 9.54 | -0.272 | 0.552 | -0.429 | -- | 1.22 | 0.221 | 15.2 | 0.85 | 1046 | -- | -- |
| 24.71 | 0.232 | 9.55 | -0.353 | 0.509 | -0.343 | -- | -- | 0.208 | 15 | 1.64 | 1086 | -- | -- |
| 32.97 | 0.269 | 9.56 | -0.458 | -- | 0.297 | -- | -0.449 | 0.166 | -- | 0.85 | 1046 | -- | -- |
| 24.73 | 0.233 | 9.54 | -0.407 | 0.549 | -- | -0.442 | -- | 0.186 | 13.4 | -- | -- | -- | -- |
| 25.51 | 0.237 | 9.55 | -0.422 | 0.55 | -- | -- | -- | 0.184 | 13.6 | -- | -- | -- | -- |
| 31.15 | 0.261 | 9.55 | -0.467 | -- | 0.359 | -- | -- | 0.183 | -- | 10.29 | 1194 | -- | -- |
| 28.59 | 0.249 | 9.55 | -- | 0.511 | -0.339 | -- | -- | 0.217 | 15 | 0.1095 | 1095 | -- | -- |
| 44.02 | 0.31 | 9.55 | -0.444 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 30.2 | 0.257 | 9.54 | -- | 0.558 | -- | -- | -- | 0.231 | 13.6 | -- | -- | -- | -- |
| 36.91 | 0.284 | 9.54 | -- | -- | 0.351 | -- | -- | 0.234 | -- | 10.29 | 1194 | -- | -- |
| 49.22 | 0.327 | 9.54 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.07 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 11 | 22.68 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 12 | 22.69 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 14 | 22.70 | temperature | 25.0 | 90 | < th | dose independent | sin | 9 | NA |
| 26 | 22.82 | humidity | 90.0 | 720 | > th | dose independent | rect. | 19 | 4 |
| 27 | 22.82 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 5 |
| 45 | 22.88 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 46 | 22.88 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 15 | 16 |
| 62 | 22.92 | humidity | 60.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 63 | 22.92 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 73 | 22.94 | temperature | 25.0 | 30 | < th | dose independent | rect. | 21 | 17 |
| 84 | 22.95 | radiation | 1.0 | 720 | < th | dose independent | rect. | 23 | 20 |
| 89 | 22.96 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 92 | 22.97 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 98 | 22.98 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 23 |
| 104 | 22.99 | humidity | 90.0 | 720 | < th | dose independent | rect. | 11 | 13 |
| 105 | 22.99 | humidity | 60.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 116 | 23.00 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 20 |
| 124 | 23.00 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 10 |
| 125 | 23.01 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 127 | 23.01 | temperature | 25.0 | 270 | < th | dose independent | rect. | 20 | 9 |
| 136 | 23.02 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 148 | 23.02 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 154 | 23.03 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 157 | 23.03 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 165 | 23.04 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 172 | 23.05 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 174 | 23.05 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 175 | 23.05 | humidity | 90.0 | 720 | > th | dose independent | rect. | 11 | 13 |
| 179 | 23.06 | radiation | 10.0 | 270 | < th | dose independent | sin | 7 | NA |
| 190 | 23.06 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 201 | 23.07 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 202 | 23.07 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 210 | 23.08 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 11 |
| 214 | 23.08 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 17 | 16 |
| 219 | 23.08 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 222 | 23.08 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 229 | 23.08 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 238 | 23.09 | humidity | 90.0 | 720 | > th | dose independent | rect. | 13 | 11 |
| 240 | 23.09 | temperature | 25.0 | 90 | < th | dose independent | rect. | 20 | 15 |
| 248 | 23.09 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 7 |
| 253 | 23.09 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 254 | 23.09 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 266 | 23.10 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 273 | 23.10 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 282 | 23.11 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 290 | 23.11 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 21 | 7 |
| 308 | 23.12 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 17 | 14 |
| 309 | 23.12 | temperature | 25.0 | 720 | < th | dose independent | rect. | 16 | 16 |
| 311 | 23.12 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 15 | 16 |
| 316 | 23.12 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 23 |
| 325 | 23.12 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 338 | 23.13 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 13 |
| 344 | 23.13 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 17 |
| 345 | 23.13 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 18 |
| 346 | 23.13 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 18 |
| 349 | 23.13 | temperature | 25.0 | 10 | > th | dose dependent | sin | 11 | NA |
| 357 | 23.13 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 381 | 23.14 | humidity | 50.0 | 720 | > th | dose independent | rect. | 14 | 5 |
| 388 | 23.14 | radiation | 10.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 399 | 23.14 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 401 | 23.15 | humidity | 70.0 | 720 | > th | dose independent | sin | 13 | NA |
| 408 | 23.15 | wind | 1.0 | 30 | > th | dose independent | rect. | 1 | 14 |
| 410 | 23.15 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 15 |
| 416 | 23.15 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 429 | 23.15 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 435 | 23.16 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 439 | 23.16 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 10 |
| 454 | 23.16 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 482 | 23.17 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 508 | 23.18 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 533 | 23.19 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 534 | 23.19 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 585 | 23.20 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 586 | 23.20 | wind | 1.0 | 30 | < th | dose dependent | rect. | 3 | 2 |
| 590 | 23.20 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 598 | 23.20 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 620 | 23.21 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 622 | 23.21 | wind | 1.0 | 30 | < th | dose independent | rect. | 3 | 2 |
| 628 | 23.21 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 9 |
| 640 | 23.21 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 20 |
| 680 | 23.22 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 681 | 23.22 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 684 | 23.22 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 696 | 23.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 703 | 23.22 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 16 | 12 |
| 714 | 23.23 | radiation | 1.0 | 720 | < th | dose independent | sin | 13 | NA |
| 715 | 23.23 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 720 | 23.23 | wind | 1.0 | 30 | < th | dose independent | rect. | 3 | 8 |
| 732 | 23.23 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 21 |
| 757 | 23.23 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 20 | 17 |
| 765 | 23.24 | temperature | 25.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 766 | 23.24 | wind | 5.0 | 720 | < th | dose independent | rect. | 7 | 4 |
| 768 | 23.24 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 780 | 23.24 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 17 |
| 781 | 23.24 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 18 |
| 782 | 23.24 | humidity | 50.0 | 10 | > th | dose independent | rect. | 21 | 18 |
| 829 | 23.24 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 20 | 15 |
| 834 | 23.24 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 844 | 23.25 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 848 | 23.25 | humidity | 70.0 | 30 | > th | dose independent | rect. | 4 | 10 |
| 857 | 23.25 | radiation | 1.0 | 720 | > th | dose independent | rect. | 5 | 14 |
| 866 | 23.25 | temperature | 25.0 | 90 | < th | dose independent | rect. | 23 | 16 |
| 876 | 23.25 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 891 | 23.25 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 23 |
| 896 | 23.25 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 937 | 23.26 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 939 | 23.26 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 942 | 23.26 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 943 | 23.26 | temperature | 20.0 | 30 | > th | dose independent | rect. | 21 | 7 |
| 966 | 23.26 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 977 | 23.26 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 19 |