BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0245100 Os02g0245100|AK111709
(322 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0245100 Similar to Peroxisomal targeting signal type 2... 612 e-175
Os03g0640100 Similar to WD-40 repeat protein MSI1 100 1e-21
Os09g0540600 Similar to WD-40 repeat protein MSI1 92 6e-19
Os11g0134500 WD40-like domain containing protein 91 1e-18
Os07g0205200 Similar to Transcription initiation factor TFI... 90 3e-18
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 84 1e-16
Os07g0600400 WD40-like domain containing protein 82 4e-16
Os06g0649500 WD40-like domain containing protein 81 8e-16
Os04g0592700 Quinonprotein alcohol dehydrogenase-like domai... 80 2e-15
Os02g0771100 Similar to COP1 (Fragment) 75 7e-14
Os06g0143900 Similar to Coatomer protein complex, beta prime 75 7e-14
Os01g0924300 WD40-like domain containing protein 74 1e-13
Os07g0572000 WD40-like domain containing protein 74 1e-13
Os10g0104500 Similar to Notchless-related 74 1e-13
Os03g0339100 Similar to PRL1 protein 74 1e-13
Os11g0594200 Similar to Notchless gene homolog 73 3e-13
Os05g0571000 Protein kinase-like domain containing protein 73 3e-13
Os01g0972900 Similar to Clone ZZD405 mRNA sequence. (Fragment) 70 2e-12
Os02g0682500 Similar to TRANSPARENT TESTA GLABRA 1 protein ... 69 3e-12
Os07g0405100 Similar to F-box-like/WD-repeat protein ebi 69 4e-12
Os02g0524600 WD40-like domain containing protein 67 2e-11
>Os02g0245100 Similar to Peroxisomal targeting signal type 2 receptor
Length = 322
Score = 612 bits (1577), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/322 (94%), Positives = 304/322 (94%)
Query: 1 MPAFKAPAPGFSVRFSPFHEQRLLAAASQHFGLVGNGHLLVLDLSXXXXXXXXXXXXXXX 60
MPAFKAPAPGFSVRFSPFHEQRLLAAASQHFGLVGNGHLLVLDLS
Sbjct: 1 MPAFKAPAPGFSVRFSPFHEQRLLAAASQHFGLVGNGHLLVLDLSAAAAPGGAPAPPPVF 60
Query: 61 XXXTSDALFDCAWSESHESLCAAASGDGSVRLFDVALPPAQNPVRLLREHAREVHGLDWN 120
TSDALFDCAWSESHESLCAAASGDGSVRLFDVALPPAQNPVRLLREHAREVHGLDWN
Sbjct: 61 AFPTSDALFDCAWSESHESLCAAASGDGSVRLFDVALPPAQNPVRLLREHAREVHGLDWN 120
Query: 121 PVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTAR 180
PVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTAR
Sbjct: 121 PVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTAR 180
Query: 181 VWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGH 240
VWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGH
Sbjct: 181 VWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGH 240
Query: 241 GYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALLARYGHHTEFVAGIDMSVLVEGL 300
GYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALLARYGHHTEFVAGIDMSVLVEGL
Sbjct: 241 GYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALLARYGHHTEFVAGIDMSVLVEGL 300
Query: 301 LASTGWDEMIYVWPFGSDPRAM 322
LASTGWDEMIYVWPFGSDPRAM
Sbjct: 301 LASTGWDEMIYVWPFGSDPRAM 322
>Os03g0640100 Similar to WD-40 repeat protein MSI1
Length = 428
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 29/268 (10%)
Query: 80 LCAAASGDGSVRLFDVALPPAQ-------NPVRLLREHAREVHGLDWNPVRRDAFLSASW 132
+ A + V +FD + P++ NP L+ H E +GL W+ + LS S
Sbjct: 144 IIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLKGHNSEGYGLSWSIFKEGHLLSGSD 203
Query: 133 DDTLKLWSPDRPASVRT------FRGHEYCVYAAAWSARHPDVFASASGDRTARVWDVRE 186
D + LW + +T F+ H+ V AW RH +F S D +WD+R
Sbjct: 204 DAQICLWDIKANSKNKTLDALQIFKYHDGVVEDVAWHLRHEYLFGSVGDDHNLLIWDLRS 263
Query: 187 PA---PTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGHGYA 243
P P + AH EV L ++ ++ ++ATGS DK+++++D+R L H
Sbjct: 264 PVSTKPVQSVAAHQGEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKIDTSLHTFDCHKEE 323
Query: 244 VKRVKFSPHRQGMLMSCSYDMTVCMWDYRK-------EDA------LLARYGHHTEFVAG 290
V +V +SP + +L SC + +WD + EDA LL +G HT ++
Sbjct: 324 VFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQTPEDAEDGPPELLFIHGGHTSKISD 383
Query: 291 IDMSVLVEGLLASTGWDEMIYVWPFGSD 318
+ + ++AS D ++ +W +
Sbjct: 384 FSWNPCEDWVIASVAEDNILQIWQMAEN 411
>Os09g0540600 Similar to WD-40 repeat protein MSI1
Length = 410
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 106 LLREHAREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPASVRT------FRGHEYCVYA 159
+LR H E +GL W+P++ LS S+D + LW + + F H+ V
Sbjct: 157 VLRGHEAEGYGLAWSPMKEGLLLSGSYDKKICLWDLAAGSGASSLDAHHVFEAHDDVVED 216
Query: 160 AAWSARHPDVFASASGDRTARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVD 219
AW + ++F SA D +WD+R P I AH EV SL ++ ++ ILA+ S D
Sbjct: 217 VAWHLKDENLFGSAGDDCKLMMWDLRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGD 276
Query: 220 KSIRVWDVRAPRAPLAQLAGHGYA---VKRVKFSPHRQGMLMSCSYDMTVCMWDYRK--- 273
+I+++D+R L H V +V+++P+ + +L S + D V +WD +
Sbjct: 277 ATIKLFDLRKLSRSLHVFDSHDSCRGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGD 336
Query: 274 ----EDA------LLARYGHHTEFVAGIDMSVLVEGLLASTGWDEMIYVWPF 315
EDA LL +G HT ++ + + + ++AS D ++ +W
Sbjct: 337 EQAEEDANDGPPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQIWEM 388
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 20/222 (9%)
Query: 69 FDCAWSESHESLCAAASGDGSVRLFDVALPPAQNPV---RLLREHAREVHGLDWNPVRRD 125
+ AWS E L + S D + L+D+A + + + H V + W+ +
Sbjct: 166 YGLAWSPMKEGLLLSGSYDKKICLWDLAAGSGASSLDAHHVFEAHDDVVEDVAWHLKDEN 225
Query: 126 AFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTARVWDVR 185
F SA D L +W ++ H+ V + +++ + + ASASGD T +++D+R
Sbjct: 226 LFGSAGDDCKLMMWDLRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATIKLFDLR 285
Query: 186 EPAPTL-VIPAHDH---EVLSLDWDKYDPSILATGSVDKSIRVWDVR------------- 228
+ + +L V +HD EV ++W+ ++LA+ + DK + +WDV
Sbjct: 286 KLSRSLHVFDSHDSCRGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQAEEDAND 345
Query: 229 APRAPLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWD 270
P L GH + + ++P ++ ++ S + D + +W+
Sbjct: 346 GPPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQIWE 387
>Os11g0134500 WD40-like domain containing protein
Length = 465
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
Query: 103 PVRLLREHAREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPA---SVRTFRGHEYCVYA 159
PV++ H E + +DW+P+ +S + + LW P + F GH V
Sbjct: 213 PVKIFGSHKDEGYAIDWSPLVTGRLVSGDCNKCIHLWEPTSNSWNVDTNPFVGHTASVED 272
Query: 160 AAWSARHPDVFASASGDRTARVWDVRE-PAPTLVIPAHDHEVLSLDWDKYDPSILATGSV 218
WS D+FAS S DRT +WD+R P + + AH+ +V + W++ ++A+G
Sbjct: 273 LQWSPTEADIFASCSADRTISIWDIRTGKKPCISVRAHNADVNVISWNRLASCMIASGCD 332
Query: 219 DKSIRVWDVRAPR--APLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKE 274
D S + D+R + + +A H + + V++SPH L S D + +WD E
Sbjct: 333 DGSFSIRDLRLIKDDSLVAHFEYHKHPITSVEWSPHEPSTLAVSSADHQLTIWDLSLE 390
>Os07g0205200 Similar to Transcription initiation factor TFIID subunit 5
(Transcription initiation factor TFIID 100 kDa subunit)
(TAF(II)100) (TAFII-100) (TAFII100)
Length = 293
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 9/224 (4%)
Query: 100 AQNPVRLLREHAREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYA 159
A+ L + H+ V+ ++P+ D LS+S D T++LW+ A++ ++GH Y V+
Sbjct: 31 ARKSCTLFQGHSGPVYSAMFSPIG-DFLLSSSADSTIRLWNTKLNANLVCYKGHNYPVWD 89
Query: 160 AAWSARHPDVFASASGDRTARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVD 219
+S FASAS DRTAR+W + + P ++ H +V + W + + +ATGS D
Sbjct: 90 VQFSPVG-HYFASASHDRTARIWSMDKIQPLRIMAGHLSDVDCVQW-HVNCNYIATGSSD 147
Query: 220 KSIRVWDVRAPRAPLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALLA 279
K++R+WDV+ + GH V + SP + M S D T+ MWD +
Sbjct: 148 KTVRLWDVQTGEC-IRMFIGHRSMVLSLAMSPDGRYM-ASGDEDGTIMMWDISSGRCVSP 205
Query: 280 RYGHHTEFVAGIDMSVLVEG-LLASTGWDEMIYVWPFGSDPRAM 322
GH++ + ++ EG LLAS D + +W S + +
Sbjct: 206 LVGHNSCVWS---LAYSCEGALLASGSADCTVKLWDVASSTKTL 246
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 16/248 (6%)
Query: 80 LCAAASGDGSVRLFDVALPPAQNPVRLLREHAREVHGLDWNPVRRDAFLSASWDDTLKLW 139
L A+AS D +R++ + +PV L H V L ++P R SAS D T+++W
Sbjct: 33 LLASASADKLLRVWSTS--DLASPVAELAGHGEGVSDLAFSPDGR-LIASASDDRTVRIW 89
Query: 140 ---------SPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTARVWDVREPAPT 190
P ++T GH + A+S H ++ AS S D T RVW+VR
Sbjct: 90 DLGDGGGGGGGGEPRLMKTLSGHTNYAFCLAFSP-HGNMLASGSFDETVRVWEVRSGRCL 148
Query: 191 LVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGHGYAVKRVKFS 250
V+PAH V S+D+++ D +++ +GS D R+WD + V KFS
Sbjct: 149 RVLPAHSEPVTSVDFNR-DGAMIVSGSYDGLCRIWDSATGHCIKTLIDDESPPVSFAKFS 207
Query: 251 PHRQGMLMSCSYDMTVCMWDYRKEDALLARYGH-HTEFVAGIDMSVLVEGLLASTGWDEM 309
P+ + +++ + D + +W++ L GH +T++ S+ + S D+
Sbjct: 208 PNGK-FVLAATLDSKLRLWNFSAGKFLKTYTGHVNTKYCIPAAFSITNGKYIVSGSEDKC 266
Query: 310 IYVWPFGS 317
+Y+W S
Sbjct: 267 VYIWDLQS 274
>Os07g0600400 WD40-like domain containing protein
Length = 436
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 94/224 (41%), Gaps = 38/224 (16%)
Query: 83 AASGDGSVRLFD----VALPPAQNPVRLLREHAREVHGLDWNPVRRDAFLSASWDDTLKL 138
AS D S+RLF V++P ++LR H V + +P + S SWD+++KL
Sbjct: 173 TASKDRSLRLFKFDTSVSVPKQIGAYKILRGHTSSVQSVAVDP-STNMICSGSWDNSIKL 231
Query: 139 WSPD----------------------------RPASVRTFRGHEYCVYAAAWSARHPDVF 170
WS + ++ TF GH CV A W R
Sbjct: 232 WSVEGSEEDGDTVSVKKRRTNSDSSGPEESLFEGSATSTFLGHTQCVSAVTWPERQ--TI 289
Query: 171 ASASGDRTARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAP 230
SAS D + R WDV+ T + + LD S++A G D +RVWD R P
Sbjct: 290 YSASWDHSVRQWDVQTGKETWNM-VSGKALNCLDCGGESSSLIAAGGSDPVLRVWDPRKP 348
Query: 231 R--APLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYR 272
AP+ Q + H + K+ P L+S S+D V +WD R
Sbjct: 349 GTLAPIFQFSSHKSWISACKWHPSSWFHLVSSSFDGKVMLWDLR 392
>Os06g0649500 WD40-like domain containing protein
Length = 654
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 11/225 (4%)
Query: 100 AQNPVRLLREHAREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYA 159
+ P L + H+ V+ ++P D LS+S D T++LWS A++ ++GH Y V+
Sbjct: 395 GKRPYTLFQGHSGPVYSAAFSPFG-DFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWD 453
Query: 160 AAWS-ARHPDVFASASGDRTARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSV 218
+S H FASAS DRTAR+W + + P ++ H +V + W + + +ATGS
Sbjct: 454 VQFSPVGH--YFASASHDRTARIWSMDKIQPLRIMAGHLSDVDCVQW-HVNCNYIATGSS 510
Query: 219 DKSIRVWDVRAPRAPLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALL 278
DK++R+WDV+ + GH V + SP + M S D T+ MWD +
Sbjct: 511 DKTVRLWDVQTGEC-IRMFIGHRSMVLSLAMSPDGRYM-ASGDEDGTIMMWDL-SSGRCV 567
Query: 279 ARYGHHTEFVAGIDMSVLVEG-LLASTGWDEMIYVWPFGSDPRAM 322
+ G H+ V + S EG LLAS D + +W S + +
Sbjct: 568 SPLGGHSSCVWSLAYS--CEGALLASGSADCTVKLWDVASSTKVL 610
>Os04g0592700 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 891
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 24/268 (8%)
Query: 65 SDALFDCAWSESHESLCAAASGDGSVRLFDVALPPAQNPVRLLREHAREVHGLD--WNPV 122
+D + D + E A A+ VR++DVA + + +L H V +D +
Sbjct: 366 NDEILDLKFVGEDEQYLAVATNLEQVRVYDVA---SMSCSYVLSGHTEIVVCIDTCISSS 422
Query: 123 RRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTARVW 182
+ ++ S D T++LW +R + + +GH + + A+S + + F S S DRT ++W
Sbjct: 423 GKTLVVTGSKDSTVRLWDMERRSCIGIGKGHLGAIGSVAFSKKSKNFFVSGSSDRTIKIW 482
Query: 183 -------DVREPAP---TLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPR- 231
DV P V+ AHD ++ SL D ++ +GS D++ +W + P
Sbjct: 483 SWDDTLDDVGSEVPLKAKAVVAAHDKDINSLSVSPND-GLVCSGSEDRTACIW--KLPNL 539
Query: 232 APLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALLARYGHHTEFVAGI 291
P L GH + V+FSP Q ++ S S D TV +W L GH + +
Sbjct: 540 VPSVVLKGHKRGIWSVEFSPVEQCVITS-SGDRTVKIWAVADGSCLKTFEGHTSSVLRA- 597
Query: 292 DMSVLVEGL-LASTGWDEMIYVWPFGSD 318
S L G S G D ++ +W ++
Sbjct: 598 --SFLSHGTQFVSCGSDGLVKLWTIKTN 623
>Os02g0771100 Similar to COP1 (Fragment)
Length = 685
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 8/207 (3%)
Query: 117 LDWNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGD 176
L WN ++ S+ ++ + +W SV + HE ++ +S P + S S D
Sbjct: 436 LSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDD 495
Query: 177 RTARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQ 236
+VW ++ A + I + + S+ ++ +A GS D I +D+R P AP+
Sbjct: 496 CKVKVWCTKQEASAINIDMKAN-ICSVKYNPGSSHYVAVGSADHHIHYFDLRNPSAPVHV 554
Query: 237 LAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALLARYGHHTE--FVAGIDMS 294
GH AV VKF + L S S D T+ +WD ++ + GH E FV +S
Sbjct: 555 FGGHKKAVSYVKFLSTNE--LASASTDSTLRLWDVKENCPVRTFRGHKNEKNFVG---LS 609
Query: 295 VLVEGLLASTGWDEMIYVWPFGSDPRA 321
V E + + +E+ S P A
Sbjct: 610 VNNEYIACGSETNEVFVYHKAISKPAA 636
>Os06g0143900 Similar to Coatomer protein complex, beta prime
Length = 907
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 9/160 (5%)
Query: 128 LSASWDDTLKLWSPDRP-ASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTARVWDVRE 186
LS+S D +KLW D+ + F GH + V ++ + + FASAS DRT ++W +
Sbjct: 115 LSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGS 174
Query: 187 PAPTLVIPAHDHEVLSLDW-DKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGHGYAVK 245
P P + H V +D+ D L TGS D + +VWD + ++ + L GH + +
Sbjct: 175 PDPNFTLDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQT-KSCVQTLEGHTHNIS 233
Query: 246 RVKFSPHRQGMLMSCSYDMTVCMW---DYRKEDALLARYG 282
V F P ++++ S D TV +W YR E+ L YG
Sbjct: 234 AVCFHPELP-IIITGSEDGTVRIWHSTTYRLENTL--NYG 270
>Os01g0924300 WD40-like domain containing protein
Length = 487
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 7/217 (3%)
Query: 110 HAREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDV 169
H V GL WN R+ SAS D T+K+W T H+ V + AWS + P+V
Sbjct: 263 HRSSVLGLAWNKEVRNVLASASADKTVKIWDVSVGKCAVTLEHHDDKVQSVAWSRQSPEV 322
Query: 170 FASASGDRTARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRA 229
S S D++ + D+++ + + + +V SL WD ++ + ++ +D R
Sbjct: 323 LLSGSFDKSVAMNDMKDGGQSCNKWSVEADVESLAWDPHNEHSFMVSLENGMVQAFDKRT 382
Query: 230 PRA------PLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWDY-RKEDALLARYG 282
+ P L H AV + FSP L + S D V +WD + + +A
Sbjct: 383 ASSNSNSGRPTFTLHAHEKAVSSISFSPSTPNFLATGSTDKMVKLWDLSNNQPSCIASLN 442
Query: 283 HHTEFVAGIDMSVLVEGLLASTGWDEMIYVWPFGSDP 319
+ + S LLAS G + VW ++P
Sbjct: 443 PKLGAIFSVSFSNDSPFLLASGGSKGKLKVWNTLTEP 479
>Os07g0572000 WD40-like domain containing protein
Length = 338
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 34/260 (13%)
Query: 80 LCAAASGDGSVRLFDVALPPAQNPVRLLREHAREVHGLDWNPVRRDAF--LSASWDDTLK 137
L A AS DG+V L P + + LR HA V + W+ D+F SAS D TL+
Sbjct: 39 LLATASLDGTVALLS---PSSLAAIATLRGHADGVSDISWST---DSFYLCSASDDRTLR 92
Query: 138 LWS-----------------------PDRPASVRTFRGHEYCVYAAAWSARHPDVFASAS 174
+W P+ +R +GH V++A ++ + AS
Sbjct: 93 IWDVRPVLAGLNPGSGGGGGGAQPADPNADRCIRVLKGHTNFVFSANFNPQTNSTVASGG 152
Query: 175 GDRTARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPL 234
D T R+WDV+ I AH V S+ + + D SI+ +GS D + ++WD
Sbjct: 153 FDCTVRIWDVKSGRCVRAIDAHSEPVTSVHFIR-DGSIIVSGSHDGTCKIWDAGTGSCLK 211
Query: 235 AQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALLARYGH-HTEFVAGIDM 293
+ AV FSP+ + +L++ + D T+ + ++ L GH + ++
Sbjct: 212 TVIDEKKPAVSFSMFSPNGKFILVA-ALDDTLKLCNFASGKFLKMYSGHVNRKYCLQSAF 270
Query: 294 SVLVEGLLASTGWDEMIYVW 313
SV + S D +Y+W
Sbjct: 271 SVTNGKYIVSGSEDNCVYIW 290
>Os10g0104500 Similar to Notchless-related
Length = 480
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 82 AAASGDGSVRLFDVALPPAQNPVRLLREHAREVHGLDWNPVRRDAFLSASWDDTLKLWSP 141
A+ SGD +VR +D++ Q P+ + H V + W+P + +S S L LW P
Sbjct: 131 ASGSGDTTVRFWDLS---TQTPLFTCKGHKNWVLCIAWSP-DGNHLVSGSKSGELILWDP 186
Query: 142 DRPASVRT-FRGHEYCVYAAAWSARHPDV----FASASGDRTARVWDVREPAPTLVIPAH 196
+ T GH + A +W H F S S D AR+WD+ + + H
Sbjct: 187 KTGKQLGTPLTGHRKWITAVSWEPVHLQSPCRRFVSTSKDGDARIWDMTTRKCVIALTGH 246
Query: 197 DHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGHGYAVKRVKFSPHRQGM 256
+ V + W ++ TGS D SI+VW+ + + L GHG+ V + S + +
Sbjct: 247 TNSVTCVKWG--GDGLIYTGSEDCSIKVWETSQGKL-VKTLQGHGHWVNSLALST--EYV 301
Query: 257 LMSCSYDMTVCMWDYRKE--DALLARY 281
L + +YD T + +E +A LARY
Sbjct: 302 LRTGAYDHTGKTYSTAEEMKEAALARY 328
>Os03g0339100 Similar to PRL1 protein
Length = 472
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 18/249 (7%)
Query: 72 AWSESHESLCAAASGDGSVRLFDVALPPAQNPVRL-LREHAREVHGLDWNPVRRDAFLSA 130
A+ S+E C S D +++++D+A ++L L H ++ GL + R SA
Sbjct: 169 AFDPSNEWFCTG-SADRTIKIWDLA----SGTLKLTLTGHIEQIRGLAVSQ-RHTYLFSA 222
Query: 131 SWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHP--DVFASASGDRTARVWDVREPA 188
D +K W ++ +R++ GH VY A HP D+ + D RVWD+R A
Sbjct: 223 GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLAL---HPTIDILLTGGRDSVCRVWDIRTKA 279
Query: 189 PTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGHGYAVKRVK 248
+ HD+ V S+ DP ++ TGS D +I+ WD+ A R + L H +V+ +
Sbjct: 280 HVSALTGHDNTVCSVFARPTDPQVV-TGSHDSTIKFWDLVAGRT-MCTLTHHKKSVRAMA 337
Query: 249 FSPHRQGMLMSCSYDMTVCMWDYRKEDALLARYGHHTEFVAGIDMSVLVEGLLASTGWDE 308
P ++ S S D + + K + L + M+V +G+LA+ G +
Sbjct: 338 LHP-KEKSFASASAD-NIKKFSLPKGEFLHNMLSQQKTIINS--MAVNEDGVLATGGDNG 393
Query: 309 MIYVWPFGS 317
++ W + S
Sbjct: 394 SLWFWDWKS 402
>Os11g0594200 Similar to Notchless gene homolog
Length = 480
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 82 AAASGDGSVRLFDVALPPAQNPVRLLREHAREVHGLDWNPVRRDAFLSASWDDTLKLWSP 141
A+ SGD +VR +D+ Q P+ + H V + W+P + +S S L LW P
Sbjct: 131 ASGSGDTTVRFWDLN---TQTPLFTCKGHKNWVLCIAWSP-DGNHLVSGSKSGELILWDP 186
Query: 142 DRPASVRT-FRGHEYCVYAAAWSARHPDV----FASASGDRTARVWDVREPAPTLVIPAH 196
+ T GH + A +W H F SAS D AR+WD+ + + H
Sbjct: 187 KTGKQLGTPLTGHRKWITAVSWEPVHLQAPCRRFVSASKDGDARIWDITTRKCVIALTGH 246
Query: 197 DHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGHGYAVKRVKFSPHRQGM 256
+ V + W ++ TGS D I+VW+ + + L GHG+ V + S + +
Sbjct: 247 TNSVTCVKWG--GDGLIYTGSEDCLIKVWETSQGKL-VKTLQGHGHWVNSLALST--EYI 301
Query: 257 LMSCSYDMTVCMWDYRKE--DALLARY 281
L + +YD T + E +A LARY
Sbjct: 302 LRTGAYDHTGKTYSTADEMKEAALARY 328
>Os05g0571000 Protein kinase-like domain containing protein
Length = 1144
Score = 72.8 bits (177), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 119 WNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRT 178
WN ++ S +D T++LW F H ++ ++S P AS S D
Sbjct: 888 WNSYIKNYLASTDYDGTVQLWDASSGQGFTQFTEHRKRAWSVSFSEVDPTKLASGSDDCC 947
Query: 179 ARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLA 238
+VW + + T I + V + + Y +LA GS D I +D+R R P ++
Sbjct: 948 VKVWSINQKNCTDTI-RNVANVCCVQFSPYSSRMLAFGSADYKIYCYDLRNTRIPWCTIS 1006
Query: 239 GHGYAVKRVKF-SPHRQGMLMSCSYDMTVCMWDYRKEDA 276
GHG AV V+F P L+S S D T+ +WD + ++
Sbjct: 1007 GHGKAVSYVRFLDPE---TLISASTDNTLKIWDLNQTNS 1042
>Os01g0972900 Similar to Clone ZZD405 mRNA sequence. (Fragment)
Length = 478
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
Query: 136 LKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTARVWDVREPAPTLV-IP 194
+++W R +R GH+ AWS+R + +S S D+ D+R P+ +
Sbjct: 236 VQIWDSSRCKRIRNMGGHQTRTGVLAWSSR---ILSSGSRDKNILQHDIRVPSDYISKFS 292
Query: 195 AHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGHGYAVKRVKFSPHRQ 254
H EV L W +D LA+G D + VW+ R+ + P+ +L H AVK + +SPH+Q
Sbjct: 293 GHRSEVCGLKW-SHDDRELASGGNDNQLLVWNQRS-QQPILRLTEHTAAVKAIAWSPHQQ 350
Query: 255 GMLMSCSYDMTVCMWDYRKEDALLARYGHHTEFVAGIDMSVLVEGLLASTGWDE-MIYVW 313
G+L S C+ + + + V + V L+++ G+ + I VW
Sbjct: 351 GLLASGGGTADRCIRFWNTVNGNMLNSVDTGSQVCNLAWCKNVNELVSTHGYSQNQIMVW 410
Query: 314 PFGS 317
+ S
Sbjct: 411 KYPS 414
>Os02g0682500 Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein)
Length = 355
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 109 EHAREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPD 168
E + DWN +AS D T +W +R H+ V+ AW
Sbjct: 141 EFCAPLTSFDWNEAEPRRIGTASIDTTCTIWDIERGVVETQLIAHDKAVHDIAWGEN--G 198
Query: 169 VFASASGDRTARVWDVREPAPTLVI---PAHDHEVLSLDWDKYDPSILATGSVDKS-IRV 224
+FAS S D + RV+D+R+ + + P D +L L W++YD +AT +D S + V
Sbjct: 199 IFASVSADGSVRVFDLRDKEHSTIFYESPRPDTPLLRLAWNRYDFHYMATLLMDSSAVVV 258
Query: 225 WDVRAPRAPLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWD 270
D+RAP P+A+L H V ++P L S D +W+
Sbjct: 259 LDMRAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDGQALIWE 304
>Os07g0405100 Similar to F-box-like/WD-repeat protein ebi
Length = 555
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 133/312 (42%), Gaps = 71/312 (22%)
Query: 65 SDALFDCAWSESHESLCAAASGDGSVRLFDV----------ALPPAQNPVRLLR----EH 110
S +F CAWS + SL A+ SGD + R++ + + PP + ++ + E
Sbjct: 207 SSEVFACAWSPAG-SLLASGSGDSTARIWTIPDGPCGSITQSSPPGVHVLKHFKGRTNEK 265
Query: 111 AREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVF 170
+++V LDWN + S+D ++W+ D F+ H+ +++ W+ + D
Sbjct: 266 SKDVTTLDWNG-EGTLLATGSYDGQARIWNSDGELKQTLFK-HKGPIFSLKWNKK-GDFL 322
Query: 171 ASASGDRTARVWDVRE----------PAPTLVI--------------------------- 193
S S D+TA VWD + APTL +
Sbjct: 323 LSGSVDKTAIVWDTKTWECKQQFEFHSAPTLDVDWRNNNSFATCSTDNMIYVCKIGDQRP 382
Query: 194 ----PAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGHGYAVKRVKF 249
H EV ++ WD S+LA+ S D + ++W ++ + + H + +++
Sbjct: 383 VKSFSGHQSEVNAIKWDPT-GSLLASCSDDWTAKIWSMKQDKC-VYDFKEHTKEIYTIRW 440
Query: 250 SP--------HRQGMLMSCSYDMTVCMWDYRKEDALLARYGHHTEFVAGIDMSVLVEGLL 301
SP ++Q +L S S+D T+ +W+ + L + GH + V + S E L
Sbjct: 441 SPTGPGTNNPNQQLLLASASFDSTIKLWEVEQGRLLYSLAGHR-QPVYSVAFSPGGE-YL 498
Query: 302 ASTGWDEMIYVW 313
AS D+ +++W
Sbjct: 499 ASGSLDQCLHIW 510
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 117 LDWNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGD 176
+DW ++F + S D+ + + V++F GH+ V A W + AS S D
Sbjct: 355 VDWR--NNNSFATCSTDNMIYVCKIGDQRPVKSFSGHQSEVNAIKWDPTGS-LLASCSDD 411
Query: 177 RTARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPS--------ILATGSVDKSIRVWDVR 228
TA++W +++ H E+ ++ W P +LA+ S D +I++W+V
Sbjct: 412 WTAKIWSMKQDKCVYDFKEHTKEIYTIRWSPTGPGTNNPNQQLLLASASFDSTIKLWEVE 471
Query: 229 APRAPLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALLARY 281
R L LAGH V V FSP + L S S D + +W KE +L Y
Sbjct: 472 QGRL-LYSLAGHRQPVYSVAFSPGGE-YLASGSLDQCLHIWSV-KEGRILKTY 521
>Os02g0524600 WD40-like domain containing protein
Length = 424
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 24/209 (11%)
Query: 84 ASGDGSVRLFDVALPPAQNPVRLLREHAREVHG----LDWNPVRRDAFLSASWDDTLKLW 139
+S GSVR A P + L + G DWN ++S D T +W
Sbjct: 152 SSNSGSVRCNGTASPDVELRCELNGNRNSDYCGPLTSFDWNDADPRRIGTSSIDTTCTIW 211
Query: 140 SPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTARVWDVREPAPTLVI------ 193
+R A H+ VY AW VFAS S D + RV+D+R+ + +I
Sbjct: 212 DVEREAVDTQLIAHDKEVYDIAWGGA--GVFASVSADGSVRVFDLRDKEHSTIIYESGSG 269
Query: 194 -----------PAHDHEVLSLDWDKYDPSILATGSVDK-SIRVWDVRAPRAPLAQLAGHG 241
A ++ L W+K DP +AT +D + V D+R P P+ +L H
Sbjct: 270 GSSNSAGADGGAASPTPLVRLGWNKQDPRYMATIIMDSPKVVVLDIRYPTLPVVELHRHH 329
Query: 242 YAVKRVKFSPHRQGMLMSCSYDMTVCMWD 270
V + ++PH + + D +WD
Sbjct: 330 SPVNAIAWAPHSSCHICTAGDDSQALIWD 358
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,292,708
Number of extensions: 509714
Number of successful extensions: 2261
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 2156
Number of HSP's successfully gapped: 30
Length of query: 322
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 221
Effective length of database: 11,762,187
Effective search space: 2599443327
Effective search space used: 2599443327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)