FiT-DB / Search/ Help/ Sample detail

Os03g0725400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat protein BIG-3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.13 (0.0344) R2 : 0.871
β1 : 2.21 (0.126) R2dD : 0.0918 R2D : 0.0672
β2 : 3.13 (0.0894) R2dC : 0.387 R2C : 0.0507
β3 : -3.78 (0.0783) R2dE : 0.733 R2E : 0.389
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.615 (0.0732) R2dN8 : 0.0267 R2N8 : -0.00596
σ : 0.641
deviance : 189.67
__
_____
C
peak time of C : 21.1
E
wheather : radiation
threshold : 28.45
memory length : 281
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.8
open length of G : 17.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.22 0.641 7.12 2.26 3.15 -3.72 1.19 -0.261 0.626 21 29.82 278 14.9 17.1
186.26 0.636 7.13 2.25 3.13 -3.75 1.03 -- 0.619 21 28.94 281 14.9 17.1
189.55 0.641 7.13 2.22 3.11 -3.73 -- 0.228 0.61 21 28.31 281 14.9 17.1
189.67 0.641 7.13 2.21 3.13 -3.78 -- -- 0.615 21.1 28.45 281 14.8 17.2
277.39 0.776 7.04 2.25 -- -4.72 -- 1.06 0.53 -- 55.83 708 13.9 17.3
279.09 0.783 7.12 2.25 4.5 -- 0.752 -- 0.6 17 -- -- -- --
280.53 0.784 7.11 2.25 4.5 -- -- -- 0.604 17 -- -- -- --
267.74 0.762 7.06 2.2 -- -4.58 -- -- 0.516 -- 85.9 718 13.7 17.8
318.66 0.831 7.18 -- 3.12 -3.62 -- -- 0.377 20.8 27.7 279 14.5 17.5
1347.29 1.72 7.07 2.09 -- -- -- -- 0.488 -- -- -- -- --
414.3 0.952 7.17 -- 4.46 -- -- -- 0.353 17 -- -- -- --
395.12 0.926 7.12 -- -- -4.58 -- -- 0.252 -- 81.37 713 13.7 18
1462.38 1.78 7.12 -- -- -- -- -- 0.257 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.06 radiation 30.0 270 < th dose dependent rect. 15 17
5 190.91 radiation 20.0 270 < th dose independent rect. 15 17
6 191.15 radiation 40.0 270 < th dose dependent rect. 13 20
21 195.73 radiation 20.0 270 < th dose independent rect. 3 6
22 195.76 radiation 30.0 270 < th dose dependent rect. 3 6
23 195.93 radiation 20.0 270 < th dose dependent rect. 3 17
32 197.29 wind 7.0 270 < th dose independent rect. 8 19
51 199.42 humidity 50.0 270 > th dose dependent rect. 3 16
72 200.96 radiation 10.0 270 < th dose independent rect. 3 17
78 201.21 humidity 70.0 90 > th dose independent rect. 4 18
95 202.40 wind 7.0 270 < th dose independent rect. 7 21
96 202.71 humidity 50.0 90 > th dose dependent rect. 5 17
147 205.17 atmosphere 1010.0 270 < th dose independent rect. 13 9
176 206.15 temperature 30.0 90 < th dose independent rect. 4 18
183 206.45 wind 7.0 270 < th dose independent rect. 7 10
188 206.61 humidity 50.0 10 > th dose dependent rect. 5 17
190 206.72 temperature 15.0 270 > th dose independent rect. 17 14
194 206.86 humidity 50.0 270 > th dose independent rect. 16 15
219 207.65 temperature 15.0 270 > th dose independent rect. 13 9
220 207.69 radiation 40.0 270 < th dose independent rect. 3 18
223 207.78 humidity 50.0 270 > th dose independent rect. 15 17
227 207.84 radiation 40.0 90 < th dose independent rect. 5 17
236 208.03 precipitation 0.1 270 < th dose independent rect. 8 19
237 208.03 precipitation 0.1 270 < th dose dependent rect. 8 19
248 208.28 humidity 70.0 90 > th dose independent rect. 4 7
262 208.57 radiation 10.0 270 < th dose dependent sin 1 NA
274 208.91 humidity 50.0 270 > th dose dependent rect. 3 6
278 209.01 humidity 70.0 270 > th dose independent rect. 3 5
282 209.15 temperature 10.0 270 > th dose dependent rect. 8 18
292 209.44 radiation 1.0 270 > th dose independent rect. 7 10
350 210.65 temperature 30.0 10 < th dose independent rect. 5 18
356 210.77 precipitation 0.1 270 < th dose independent rect. 3 5
357 210.77 precipitation 0.1 270 < th dose dependent rect. 3 5
368 211.01 temperature 30.0 270 < th dose independent rect. 15 17
374 211.13 wind 9.0 270 < th dose independent rect. 3 5
375 211.13 temperature 10.0 270 > th dose independent rect. 3 5
377 211.13 temperature 30.0 270 < th dose independent rect. 3 5
378 211.13 humidity 50.0 270 > th dose independent rect. 3 5
380 211.13 atmosphere 995.0 270 > th dose independent rect. 3 5
381 211.13 atmosphere 1015.0 270 < th dose independent rect. 3 5
382 211.13 temperature 10.0 270 > th dose independent rect. 8 19
398 211.51 humidity 70.0 270 > th dose independent rect. 2 8
412 211.76 temperature 15.0 270 > th dose independent rect. 3 18
420 211.84 temperature 10.0 270 > th dose dependent rect. 8 7
430 212.02 radiation 1.0 90 > th dose independent rect. 9 10
444 212.04 atmosphere 995.0 270 > th dose dependent rect. 21 6
454 212.31 radiation 40.0 270 < th dose independent rect. 12 10
468 212.65 precipitation 0.1 270 < th dose independent rect. 7 10
470 212.65 precipitation 0.1 270 < th dose dependent rect. 7 10
488 212.91 atmosphere 1010.0 270 < th dose independent rect. 16 16
519 213.49 atmosphere 1015.0 270 < th dose independent rect. 3 18
545 213.80 precipitation 0.1 270 < th dose independent rect. 9 17
547 213.80 precipitation 0.1 270 < th dose dependent rect. 9 17
561 213.93 wind 9.0 270 < th dose dependent rect. 8 7
571 214.13 wind 9.0 270 < th dose dependent rect. 8 19
575 214.19 wind 7.0 270 < th dose independent rect. 21 6
598 214.56 temperature 10.0 270 > th dose independent rect. 7 10
599 214.56 atmosphere 1015.0 270 < th dose independent rect. 7 10
609 214.64 precipitation 0.1 270 < th dose independent rect. 21 6
610 214.64 precipitation 0.1 270 < th dose dependent rect. 21 6
622 214.85 radiation 40.0 10 < th dose dependent rect. 6 17
626 214.91 wind 9.0 270 < th dose independent rect. 22 15
665 215.38 radiation 1.0 270 < th dose dependent rect. 21 6
666 215.39 temperature 10.0 270 > th dose independent rect. 21 6
667 215.39 temperature 30.0 270 < th dose independent rect. 21 6
668 215.39 humidity 50.0 270 > th dose independent rect. 21 6
671 215.39 atmosphere 995.0 270 > th dose independent rect. 21 6
672 215.39 radiation 1.0 270 < th dose independent rect. 21 6
692 215.59 radiation 20.0 10 < th dose independent rect. 5 18
701 215.71 humidity 50.0 270 > th dose independent rect. 13 9
709 215.81 temperature 30.0 90 < th dose dependent rect. 5 16
712 215.85 radiation 40.0 10 < th dose independent rect. 5 5
715 215.86 humidity 70.0 270 > th dose independent rect. 4 3
724 215.98 atmosphere 995.0 270 > th dose dependent rect. 22 4
773 216.52 atmosphere 995.0 270 > th dose independent rect. 17 14
775 216.53 radiation 10.0 270 > th dose independent sin 2 NA
776 216.55 wind 7.0 270 < th dose independent rect. 4 3
778 216.55 temperature 10.0 270 > th dose independent rect. 4 3
780 216.55 temperature 30.0 270 < th dose independent rect. 4 3
781 216.55 humidity 50.0 270 > th dose independent rect. 4 3
783 216.55 atmosphere 995.0 270 > th dose independent rect. 4 3
784 216.55 atmosphere 1015.0 270 < th dose independent rect. 4 3
786 216.55 temperature 10.0 270 > th dose independent rect. 7 21
790 216.57 temperature 10.0 270 > th dose independent rect. 22 15
791 216.57 atmosphere 995.0 270 > th dose independent rect. 22 15
801 216.72 temperature 10.0 270 > th dose dependent rect. 3 5
806 216.73 radiation 10.0 270 > th dose independent rect. 16 22
850 216.88 wind 9.0 270 < th dose independent rect. 17 14
866 217.02 precipitation 0.1 270 < th dose independent rect. 2 7
868 217.02 precipitation 0.1 270 < th dose dependent rect. 2 7
888 217.25 temperature 10.0 270 > th dose dependent rect. 4 3
891 217.27 wind 9.0 270 < th dose independent rect. 2 7
892 217.27 temperature 10.0 270 > th dose independent rect. 2 7
895 217.27 atmosphere 995.0 270 > th dose independent rect. 2 7
896 217.27 atmosphere 1015.0 270 < th dose independent rect. 2 7
897 217.27 temperature 10.0 270 > th dose independent rect. 9 17
903 217.31 temperature 30.0 10 < th dose dependent rect. 6 16
924 217.42 precipitation 0.1 270 < th dose independent rect. 22 15
925 217.42 precipitation 0.1 270 < th dose dependent rect. 22 15
971 217.74 radiation 40.0 10 < th dose independent rect. 5 18