Os03g0339100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PRL1 protein.
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Os03g0339100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PRL1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.44 | 0.377 | 7.18 | 0.113 | 0.521 | -0.32 | 0.0301 | -1.69 | -0.437 | 12.9 | 68.99 | 1941 | -- | -- |
| 67.37 | 0.382 | 7.21 | 0.0221 | 0.516 | -0.451 | 0.167 | -- | -0.48 | 13.2 | 69.99 | 3321 | -- | -- |
| 64.37 | 0.374 | 7.18 | 0.143 | 0.521 | -0.348 | -- | -1.79 | -0.449 | 12.9 | 70 | 1969 | -- | -- |
| 61.89 | 0.366 | 7.2 | 0.00638 | 0.585 | -0.705 | -- | -- | -0.535 | 13.1 | 72 | 12148 | -- | -- |
| 79.52 | 0.415 | 7.2 | 0.106 | -- | -0.461 | -- | -1.46 | -0.488 | -- | 73.4 | 1754 | -- | -- |
| 73.53 | 0.402 | 7.2 | 0.0192 | 0.529 | -- | 0.139 | -- | -0.47 | 13.6 | -- | -- | -- | -- |
| 73.6 | 0.402 | 7.2 | 0.0235 | 0.528 | -- | -- | -- | -0.469 | 13.5 | -- | -- | -- | -- |
| 77.95 | 0.411 | 7.21 | 0.0943 | -- | -0.816 | -- | -- | -0.55 | -- | 74 | 11877 | -- | -- |
| 61.13 | 0.364 | 7.23 | -- | 0.524 | -0.79 | -- | -- | -0.611 | 13.1 | 72.71 | 12058 | -- | -- |
| 90.68 | 0.445 | 7.21 | 0.00239 | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
| 73.62 | 0.401 | 7.2 | -- | 0.528 | -- | -- | -- | -0.472 | 13.5 | -- | -- | -- | -- |
| 77.56 | 0.41 | 7.24 | -- | -- | -0.807 | -- | -- | -0.622 | -- | 72.25 | 11896 | -- | -- |
| 90.68 | 0.444 | 7.21 | -- | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.98 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 14 | 61.11 | humidity | 70 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 15 | 61.11 | humidity | 70 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 16 | 61.17 | humidity | 70 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 44 | 61.29 | humidity | 80 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 48 | 61.34 | humidity | 70 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 54 | 61.38 | humidity | 70 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 68 | 61.39 | humidity | 60 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 76 | 61.43 | humidity | 70 | 14400 | > th | dose independent | sin | 2 | NA |
| 78 | 61.43 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 89 | 61.47 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 19 |
| 108 | 61.51 | humidity | 70 | 14400 | > th | dose dependent | rect. | 6 | 15 |
| 116 | 61.54 | humidity | 70 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 139 | 61.58 | humidity | 70 | 14400 | > th | dose dependent | sin | 0 | NA |
| 151 | 61.59 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 18 |
| 163 | 61.60 | humidity | 70 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 177 | 61.62 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 18 |
| 240 | 61.68 | humidity | 70 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 290 | 61.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 14 |
| 298 | 61.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 350 | 61.76 | humidity | 70 | 14400 | > th | dose independent | no | NA | NA |
| 470 | 61.81 | humidity | 80 | 14400 | < th | dose independent | sin | 1 | NA |
| 491 | 61.82 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 493 | 61.82 | humidity | 90 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 840 | 62.00 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 20 |