Os09g0540600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WD-40 repeat protein MSI1.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0540600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to WD-40 repeat protein MSI1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.78 | 0.497 | 6.17 | 0.951 | 2.97 | 2.33 | 0.622 | -1.47 | 0.185 | 20.1 | 25.4 | 286 | -- | -- |
| 112.5 | 0.494 | 6.16 | 1.12 | 2.99 | 2.18 | 0.667 | -- | 0.215 | 20.1 | 25.36 | 287 | -- | -- |
| 112.85 | 0.495 | 6.16 | 0.978 | 2.95 | 2.31 | -- | -1.05 | 0.196 | 20.1 | 25.4 | 294 | -- | -- |
| 113.16 | 0.495 | 6.15 | 1.11 | 2.97 | 2.2 | -- | -- | 0.231 | 20.1 | 25.4 | 294 | -- | -- |
| 408.73 | 0.942 | 6.22 | -0.00208 | -- | 4.55 | -- | -2.92 | -0.445 | -- | 24.2 | 533 | -- | -- |
| 191.8 | 0.649 | 6.14 | 1.5 | 3.74 | -- | 1.31 | -- | 0.362 | 19.4 | -- | -- | -- | -- |
| 196.49 | 0.656 | 6.14 | 1.47 | 3.74 | -- | -- | -- | 0.365 | 19.4 | -- | -- | -- | -- |
| 412.93 | 0.946 | 6.14 | 0.629 | -- | 4.28 | -- | -- | -0.0809 | -- | 24.5 | 522 | -- | -- |
| 144.71 | 0.56 | 6.19 | -- | 2.94 | 2.39 | -- | -- | 0.118 | 20.1 | 25.3 | 314 | -- | -- |
| 939.55 | 1.43 | 6.05 | 1.4 | -- | -- | -- | -- | 0.303 | -- | -- | -- | -- | -- |
| 253.21 | 0.744 | 6.17 | -- | 3.72 | -- | -- | -- | 0.201 | 19.4 | -- | -- | -- | -- |
| 423.01 | 0.958 | 6.15 | -- | -- | 4.38 | -- | -- | -0.155 | -- | 24.5 | 533 | -- | -- |
| 991.6 | 1.47 | 6.08 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.03 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 12 |
| 6 | 108.94 | temperature | 25 | 270 | > th | dose dependent | sin | 23 | NA |
| 12 | 109.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 40 | 110.61 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 116 | 112.54 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 132 | 112.67 | temperature | 25 | 90 | > th | dose dependent | sin | 19 | NA |
| 153 | 113.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 157 | 113.73 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 203 | 116.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 9 |
| 211 | 116.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 214 | 116.44 | temperature | 10 | 270 | > th | dose dependent | sin | 23 | NA |
| 255 | 117.47 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 267 | 117.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 13 |
| 341 | 119.60 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 436 | 121.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 461 | 122.05 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 465 | 122.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 511 | 122.69 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 554 | 123.15 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 563 | 123.33 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 660 | 124.43 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 668 | 124.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 669 | 124.51 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 15 |
| 686 | 124.70 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 698 | 124.81 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 775 | 125.58 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 813 | 125.83 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 838 | 126.00 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 840 | 126.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 869 | 126.13 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 879 | 126.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 917 | 126.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 942 | 126.44 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 945 | 126.45 | temperature | 25 | 14400 | > th | dose independent | sin | 0 | NA |
| 946 | 126.45 | temperature | 25 | 14400 | < th | dose independent | sin | 0 | NA |