BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0540600 Os09g0540600|AK103397
(410 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0540600 Similar to WD-40 repeat protein MSI1 692 0.0
Os03g0640100 Similar to WD-40 repeat protein MSI1 396 e-110
AK111188 179 4e-45
Os01g0710000 Similar to WD-repeat protein RBAP1 141 8e-34
Os07g0139700 127 2e-29
Os11g0134500 WD40-like domain containing protein 125 7e-29
AK108400 107 2e-23
Os02g0245100 Similar to Peroxisomal targeting signal type 2... 92 7e-19
Os07g0405100 Similar to F-box-like/WD-repeat protein ebi 77 3e-14
Os01g0780400 WD40-like domain containing protein 70 4e-12
>Os09g0540600 Similar to WD-40 repeat protein MSI1
Length = 410
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/410 (84%), Positives = 346/410 (84%)
Query: 1 MDGGXXXXXXXXXXEMEEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARS 60
MDGG EMEEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARS
Sbjct: 1 MDGGSSTAARSSAAEMEEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARS 60
Query: 61 HRLVLGTHTSDETPNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSISRSVPHKGEVNR 120
HRLVLGTHTSDETPNH SVSISRSVPHKGEVNR
Sbjct: 61 HRLVLGTHTSDETPNHLLLADAALPLPPRLAAAAAAAGGAVPAPSVSISRSVPHKGEVNR 120
Query: 121 ARCMPQRPYTVATKTCVDEVHVYHLGDGGEKGGADVVLRGHEAEGYGLAWSPMKEGLLLS 180
ARCMPQRPYTVATKTCVDEVHVYHLGDGGEKGGADVVLRGHEAEGYGLAWSPMKEGLLLS
Sbjct: 121 ARCMPQRPYTVATKTCVDEVHVYHLGDGGEKGGADVVLRGHEAEGYGLAWSPMKEGLLLS 180
Query: 181 GSYDKKICLWXXXXXXXXXXXXXXXVFEAHDDVVEDVAWHLKDENLFGSAGDDCKLMMWD 240
GSYDKKICLW VFEAHDDVVEDVAWHLKDENLFGSAGDDCKLMMWD
Sbjct: 181 GSYDKKICLWDLAAGSGASSLDAHHVFEAHDDVVEDVAWHLKDENLFGSAGDDCKLMMWD 240
Query: 241 LRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATIKLFDLRKLSRSLHVFDSHDSC 300
LRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATIKLFDLRKLSRSLHVFDSHDSC
Sbjct: 241 LRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATIKLFDLRKLSRSLHVFDSHDSC 300
Query: 301 RGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQAEEDANDGPPELLFVHGGHTAK 360
RGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQAEEDANDGPPELLFVHGGHTAK
Sbjct: 301 RGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQAEEDANDGPPELLFVHGGHTAK 360
Query: 361 ISELSWNPTQKWVMASVAEDNILQIWEMAESIYCXXXXXXXXXXXSCPAT 410
ISELSWNPTQKWVMASVAEDNILQIWEMAESIYC SCPAT
Sbjct: 361 ISELSWNPTQKWVMASVAEDNILQIWEMAESIYCDDNYLHDNDDDSCPAT 410
>Os03g0640100 Similar to WD-40 repeat protein MSI1
Length = 428
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/394 (52%), Positives = 252/394 (63%), Gaps = 20/394 (5%)
Query: 17 EEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARS-HRLVLGTHTSDETPN 75
EE++ WKKN P LYDLVI+ LEWPSLTVQWLP + G S ++VLGTHTSD PN
Sbjct: 23 EEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRAEPAGKDHSVQKMVLGTHTSDNEPN 82
Query: 76 HXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXSVSISRSVPHKGEVNRARCMPQRP 128
+ V I + + H GEVNRAR MPQ
Sbjct: 83 YLMLAQVQLPLDDAEADARHYDDDHAEIGGFGAASGKVQIVQQINHDGEVNRARYMPQNS 142
Query: 129 YTVATKTCVDEVHVYHLGDGGEK---GGA---DVVLRGHEAEGYGLAWSPMKEGLLLSGS 182
+ +ATKT EV+V+ K GA D+ L+GH +EGYGL+WS KEG LLSGS
Sbjct: 143 FIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLKGHNSEGYGLSWSIFKEGHLLSGS 202
Query: 183 YDKKICLWXXXXXXXXXXXXXXXVFEAHDDVVEDVAWHLKDENLFGSAGDDCKLMMWDLR 242
D +ICLW +F+ HD VVEDVAWHL+ E LFGS GDD L++WDLR
Sbjct: 203 DDAQICLWDIKANSKNKTLDALQIFKYHDGVVEDVAWHLRHEYLFGSVGDDHNLLIWDLR 262
Query: 243 T---NKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATIKLFDLRKLSRSLHVFDSHDS 299
+ KP QS+ AHQ EVN L+FNPFNEW++A+ S D T+KLFDLRK+ SLH FD H
Sbjct: 263 SPVSTKPVQSVAAHQGEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKIDTSLHTFDCH-- 320
Query: 300 CRGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQAEEDANDGPPELLFVHGGHTA 359
+ EVFQV W+P ET+LAS +R+M+WD+SRI EQ EDA DGPPELLF+HGGHT+
Sbjct: 321 -KEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQTPEDAEDGPPELLFIHGGHTS 379
Query: 360 KISELSWNPTQKWVMASVAEDNILQIWEMAESIY 393
KIS+ SWNP + WV+ASVAEDNILQIW+MAE+IY
Sbjct: 380 KISDFSWNPCEDWVIASVAEDNILQIWQMAENIY 413
>AK111188
Length = 798
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 159/348 (45%), Gaps = 64/348 (18%)
Query: 108 ISRSVPHKGEVNRARCMPQRPYTVATKTCVDEVHVYHLGDGG------------------ 149
+ RSV H GEV RARCMPQRP VAT++ V VY++G G
Sbjct: 223 LRRSVRHVGEVWRARCMPQRPTLVATRSAAPAVKVYNIGQPGHLPVDMRDGSAAAAISDA 282
Query: 150 -------EKG-------GADVVLRGHEAEGYGLAW--SPMKEGLLLSGSYDKKICLWXXX 193
E+G L GH+ G ++W + G +LSG D +ICLW
Sbjct: 283 ELQAHPRERGVYKERDETCIATLSGHQEHGLAMSWHHHAARTGHILSGVDDGQICLWNID 342
Query: 194 XXXXXXXXXXXXV------------FEAHDDVVEDVAWHLKDE--NLFGSAGDDCKLMMW 239
V F +H VED+AW N+F S G D +LM+W
Sbjct: 343 DKPQQSQLNFTGVGSQLNTIPARMTFTSHSGSVEDIAWSRDPNAPNVFASVGADRQLMLW 402
Query: 240 DLRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATIKLFDLRKLSRSLHVFDSHDS 299
D P AH E N+ +++P N + L S D IKL+D+RK S +
Sbjct: 403 DSARKTPASRWTAHVSEANACAWSPHNPYWLLSGGSDGDIKLWDVRKASPDCKPMTVPRA 462
Query: 300 CRGEVFQVEWNPNLETVLASS---------------AADKRVMIWDVSRIGDEQAEEDAN 344
R EVF V+W P AS+ A++RVM+WDVSR G Q + +
Sbjct: 463 GR-EVFGVQWLPYRTRAAASTTAGDGVFGGYCFSSFGAERRVMVWDVSRSGMAQTQPEQR 521
Query: 345 DGPPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQIWEMAESI 392
GPPELLFVHGGHT +++++ W+ W SV D ++ +W +A+++
Sbjct: 522 CGPPELLFVHGGHTGRVADMDWSADDPWYAVSVCSDEVVHVWSIADAL 569
>Os01g0710000 Similar to WD-repeat protein RBAP1
Length = 453
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 113/427 (26%), Positives = 175/427 (40%), Gaps = 59/427 (13%)
Query: 17 EEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNH 76
E + WK PVLYD + L WPSL+ +W P ++ R RL L T PN
Sbjct: 12 ERYAQWKSLIPVLYDWFANHNLVWPSLSCRWGPQFEKATYKNR-QRLYLSEQTDGTVPNT 70
Query: 77 XXXXXXXXXXXXXXXXXXXXXXXXXXXXS-VSISRSVPHKGEVNRARCMPQRPYTVATKT 135
V +++ H GEVNR R +PQ +AT T
Sbjct: 71 LVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIIATHT 130
Query: 136 CVDEVHVYHLGDGGEKGGA--------DVVLRGH-EAEGYGLAWSPMKEGLLLSGSYDKK 186
+V ++ + + D++LRGH + + LA P E +LSG DK
Sbjct: 131 DSPDVLIWDVEAQPNRQAQLAQMESRPDLILRGHKDIAEFALAMCPA-EPYVLSGGKDKS 189
Query: 187 ICLWXXXXXXXXXXXXXXX--------------------------VFEAHDDVVEDVAWH 220
+ W +F HD VEDV +
Sbjct: 190 VVWWSIQDHISALGDSSKTESSPGASGSKGKTANDKDSPKVDPRGIFLGHDSTVEDVQFC 249
Query: 221 LKDENLFGSAGDDCKLMMWDLRTNK-PGQSI-VAHQKEVNSLSFNPFNEWILASASGDAT 278
F S GDD L++WD R+ P + AH +V+ + +N + + + S D +
Sbjct: 250 PSSAQEFCSVGDDSCLILWDARSGTGPAVKVEKAHGGDVHCVDWNLHDVNYILTGSADNS 309
Query: 279 IKLFDLRKLSRS-----LHVFDSHDSCRGEVFQVEWNPNLETVLASSAADKRVMIWDVSR 333
++++D R L +H F+ H + V V+W+P+ +V SSA D + +WD +
Sbjct: 310 VRMWDRRNLGSGGAGIPVHKFEGH---KAAVLCVQWSPDKASVFGSSAEDGFLNVWDHEK 366
Query: 334 IGDEQAEEDANDGPPELLFVHGGHTAKISELSWNPTQKWVMASVAED-------NILQIW 386
+G+++ + P L F H GH KI + WN + W + SV++D LQIW
Sbjct: 367 VGNKKNP----NAPAGLFFQHAGHRDKIVDFHWNSSDPWTIVSVSDDGESTGGGGTLQIW 422
Query: 387 EMAESIY 393
M++ IY
Sbjct: 423 RMSDLIY 429
>Os07g0139700
Length = 270
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 59/64 (92%)
Query: 106 VSISRSVPHKGEVNRARCMPQRPYTVATKTCVDEVHVYHLGDGGEKGGADVVLRGHEAEG 165
VSISRSVPH GEVN ARCMPQRPYTVATKTCVDEVHVYHLGDGGEK DVVLRGHEAEG
Sbjct: 132 VSISRSVPHNGEVNHARCMPQRPYTVATKTCVDEVHVYHLGDGGEKSDVDVVLRGHEAEG 191
Query: 166 YGLA 169
YGLA
Sbjct: 192 YGLA 195
>Os11g0134500 WD40-like domain containing protein
Length = 465
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 139/304 (45%), Gaps = 38/304 (12%)
Query: 110 RSVPHKGEVNRARCMPQRPYTVATKTCVDEVHVY----HLGDGGEKGGAD---------- 155
+ V H G VNR R M Q P+ AT V V+ L E G
Sbjct: 152 KKVAHAGCVNRIRSMNQEPHICATWGDTGHVQVWDFSSFLNSLAESGAVAHNEDDRIHNH 211
Query: 156 ---VVLRGHEAEGYGLAWSPMKEGLLLSGSYDKKICLWXXXXXXXXXXXXXXXVFEAHDD 212
+ H+ EGY + WSP+ G L+SG +K I LW F H
Sbjct: 212 VPVKIFGSHKDEGYAIDWSPLVTGRLVSGDCNKCIHLWEPTSNSWNVDTNP---FVGHTA 268
Query: 213 VVEDVAWHLKDENLFGSAGDDCKLMMWDLRT-NKPGQSIVAHQKEVNSLSFNPFNEWILA 271
VED+ W + ++F S D + +WD+RT KP S+ AH +VN +S+N ++A
Sbjct: 269 SVEDLQWSPTEADIFASCSADRTISIWDIRTGKKPCISVRAHNADVNVISWNRLASCMIA 328
Query: 272 SASGDATIKLFDLRKLSRSLHV--FDSHDSCRGEVFQVEWNPNLETVLASSAADKRVMIW 329
S D + + DLR + V F+ H + + VEW+P+ + LA S+AD ++ IW
Sbjct: 329 SGCDDGSFSIRDLRLIKDDSLVAHFEYH---KHPITSVEWSPHEPSTLAVSSADHQLTIW 385
Query: 330 DVS--RIGDEQAEEDAN---------DGPPELLFVHGGHTAKISELSWNPTQKWVMASVA 378
D+S + +E+AE A D PP+LLFVH G + EL W+P ++ S A
Sbjct: 386 DLSLEKDAEEEAEFRARMREQADAPEDLPPQLLFVHQGQK-DLKELHWHPQIPSMIISTA 444
Query: 379 EDNI 382
D
Sbjct: 445 ADGF 448
>AK108400
Length = 377
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 28/286 (9%)
Query: 114 HKGEVNRARCMPQRPYTVATKTCVDEVHVYHLGDGGEKGGADVVLRGHEAEGYGLAWSPM 173
H GE+N+ R P + D VH+Y L + + V H+ EGY L W +
Sbjct: 72 HNGEINKIRLSPDASSAITFDNSGD-VHLYDLSAVNKPPTSFVY---HKQEGYALEW--V 125
Query: 174 KEGLLLSGSYDKKICLWXXXXXXXXXXXXXXXVFEAHDDVVEDVAWHLKDENLFGSAGDD 233
LSG+ D +I LW F++H V+ D++ + ++LFGS DD
Sbjct: 126 LNDRFLSGANDSQIVLWDVSKPLTPLQ-----AFKSHTAVINDLSHSVPSQHLFGSVADD 180
Query: 234 CKLMMWDLRTN-KPGQSIVAHQKEV-NSLSFNPFNEWILASASGDATIKLFDLRKLSRSL 291
+ DLR++ G +I V N++SF+P + A A D + ++DLR +
Sbjct: 181 YWTHIHDLRSSVNDGPAIKTQTSHVQNAISFHPQIATLYAVAGKDKVVNVYDLRNPNEPF 240
Query: 292 H-VFDSHDSCRGEVFQVEWNPNLETVLASS-AADKRVMIWDVSRIGDEQAEEDANDG--- 346
+F +S G V+WN + E L +S D+RV+ W+++ + ++ + D+ +G
Sbjct: 241 RKLFGHTESVAG----VQWNLDSEPELLTSWGYDRRVITWNLAALNEDFSYPDSEEGGRK 296
Query: 347 ------PPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQIW 386
P L F+HGGHT +++++S +P + A+ +D++L+++
Sbjct: 297 RAAKSADPCLYFIHGGHTGRVNDVSIHPKIPSLYATCGDDSLLEVY 342
>Os02g0245100 Similar to Peroxisomal targeting signal type 2 receptor
Length = 322
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 22/232 (9%)
Query: 157 VLRGHEAEGYGLAWSPMKEGLLLSGSYDKKICLWXXXXXXXXXXXXXXXVFEAHDDVVED 216
+LR H E +GL W+P++ LS S+D + LW F H+ V
Sbjct: 106 LLREHAREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPASVR------TFRGHEYCVYA 159
Query: 217 VAWHLKDENLFGSAGDDCKLMMWDLRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGD 276
AW + ++F SA D +WD+R P I AH EV SL ++ ++ ILA+ S D
Sbjct: 160 AAWSARHPDVFASASGDRTARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVD 219
Query: 277 ATIKLFDLRKLSRSLHVFDSHDSCRGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGD 336
+I+++D+R L H V +V+++P+ + +L S + D V +WD +
Sbjct: 220 KSIRVWDVRAPRAPLAQLAGHGYA---VKRVKFSPHRQGMLMSCSYDMTVCMWDYRK--- 273
Query: 337 EQAEEDANDGPPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQIWEM 388
EDA LL +G HT ++ + + + ++AS D ++ +W
Sbjct: 274 ----EDA------LLARYGHHTEFVAGIDMSVLVEGLLASTGWDEMIYVWPF 315
>Os07g0405100 Similar to F-box-like/WD-repeat protein ebi
Length = 555
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 37/242 (15%)
Query: 157 VLRGHEAEGYGLAWSPMKEGLLLSGSYDKKICLWXXXXXXXXXXXXXXXVFEAHDDVVED 216
L H+ + L W+ K LLSGS DK +W FE H D
Sbjct: 302 TLFKHKGPIFSLKWNK-KGDFLLSGSVDKTAIVWDTKTWECKQQ------FEFHSAPTLD 354
Query: 217 VAWHLKDENLFGSAGDDCKLMMWDLRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGD 276
V W ++ N F + D + + + +P +S HQ EVN++ ++P +LAS S D
Sbjct: 355 VDW--RNNNSFATCSTDNMIYVCKIGDQRPVKSFSGHQSEVNAIKWDPTGS-LLASCSDD 411
Query: 277 ATIKLFDLRKLSRSLHVFDSHDSCRGEVFQVEW--------NPNLETVLASSAADKRVMI 328
T K++ +++ + ++ F H E++ + W NPN + +LAS++ D + +
Sbjct: 412 WTAKIWSMKQ-DKCVYDFKEHTK---EIYTIRWSPTGPGTNNPNQQLLLASASFDSTIKL 467
Query: 329 WDVSRIGDEQAEEDANDGPPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQIWEM 388
W+V EQ LL+ GH + ++++P ++ +AS + D L IW +
Sbjct: 468 WEV-----EQG---------RLLYSLAGHRQPVYSVAFSPGGEY-LASGSLDQCLHIWSV 512
Query: 389 AE 390
E
Sbjct: 513 KE 514
>Os01g0780400 WD40-like domain containing protein
Length = 838
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 25/185 (13%)
Query: 207 FEAHDDVVEDVAWHLKDENLFGSAGDDCKLMMWDLRTNKPGQSIVAHQKEVNSLSFNPFN 266
F AHD V ++ K +F + G D K+ +W + P S+ H V ++ F+
Sbjct: 13 FVAHDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGKQTPLLSLSGHTGSVEAVEFDTAE 72
Query: 267 EWILASASGDATIKLFDLR--KLSRSLHVFDSHDSCRGEVFQVEWNPNLETVLASSAADK 324
+LA +S + +IKL+DL K+ RSL R VE++P E AS ++D
Sbjct: 73 VLVLAGSS-NGSIKLWDLEEAKVVRSL------TGHRSSCTSVEFHPFGE-FFASGSSDT 124
Query: 325 RVMIWDVSRIGDEQAEEDANDGPPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQ 384
+ IWD+ + G + + GH I + + P +WV+ EDNI++
Sbjct: 125 DLKIWDIKKKG--------------CIHTYKGHRGAIRTIRFTPDGRWVVTG-GEDNIVK 169
Query: 385 IWEMA 389
+W++
Sbjct: 170 VWDLT 174
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 28/229 (12%)
Query: 160 GHEAEGYGLAWSPMKEGLLLSGSYDKKICLWXXXXXXXXXXXXXXXVFEAHDDVVEDVAW 219
H+AE L+ + ++G D+K+ LW H VE V +
Sbjct: 15 AHDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGKQTPLLS------LSGHTGSVEAVEF 68
Query: 220 HLKDENLFGSAGDDCKLMMWDLRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATI 279
E L + + + +WDL K +S+ H+ S+ F+PF E+ AS S D +
Sbjct: 69 DTA-EVLVLAGSSNGSIKLWDLEEAKVVRSLTGHRSSCTSVEFHPFGEF-FASGSSDTDL 126
Query: 280 KLFDLRKLSRSLHVFDSHDSCRGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQA 339
K++D++K +H + H RG + + + P+ V+ + D V +WD++
Sbjct: 127 KIWDIKK-KGCIHTYKGH---RGAIRTIRFTPDGRWVV-TGGEDNIVKVWDLT------- 174
Query: 340 EEDANDGPPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQIWEM 388
+LL H+ +I + ++P Q++++A+ + D ++ W++
Sbjct: 175 -------AGKLLHDFKFHSGQIRCIDFHP-QEFLLATGSADRTVKFWDL 215
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,758,204
Number of extensions: 557581
Number of successful extensions: 2128
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 2052
Number of HSP's successfully gapped: 16
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)