Os01g0780400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
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Os01g0780400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.76 | 0.348 | 9.09 | -1.1 | 0.654 | -0.954 | 0.194 | -0.321 | -0.125 | 6.73 | 0.42 | 1467 | -- | -- |
| 54.77 | 0.345 | 9.09 | -1.11 | 0.644 | -0.899 | 0.239 | -- | -0.131 | 6.62 | 0.44 | 1476 | -- | -- |
| 54.84 | 0.345 | 9.09 | -1.1 | 0.653 | -0.951 | -- | -0.325 | -0.127 | 6.82 | 0.43 | 1467 | -- | -- |
| 54.88 | 0.345 | 9.09 | -1.13 | 0.653 | -0.898 | -- | -- | -0.131 | 6.73 | 0.4344 | 1475 | -- | -- |
| 76.99 | 0.409 | 9.09 | -1.08 | -- | -1.11 | -- | -0.596 | -0.127 | -- | 0.4599 | 1480 | -- | -- |
| 63.02 | 0.372 | 9.07 | -0.929 | 0.679 | -- | 0.0639 | -- | -0.0174 | 7.14 | -- | -- | -- | -- |
| 63.03 | 0.372 | 9.07 | -0.928 | 0.679 | -- | -- | -- | -0.0175 | 7.17 | -- | -- | -- | -- |
| 77.01 | 0.409 | 9.11 | -1.13 | -- | -0.99 | -- | -- | -0.127 | -- | 0.45 | 1482 | -- | -- |
| 82.12 | 0.422 | 9.06 | -- | 0.644 | -0.41 | -- | -- | 0.00879 | 6.79 | 8.23 | 1507 | -- | -- |
| 87.41 | 0.437 | 9.08 | -0.915 | -- | -- | -- | -- | -0.00554 | -- | -- | -- | -- | -- |
| 85.72 | 0.433 | 9.04 | -- | 0.67 | -- | -- | -- | 0.0859 | 7.25 | -- | -- | -- | -- |
| 103.75 | 0.476 | 9.06 | -- | -- | -0.227 | -- | -- | 0.0968 | -- | 0.45 | 1482 | -- | -- |
| 109.51 | 0.488 | 9.06 | -- | -- | -- | -- | -- | 0.096 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 9 | 50.22 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 11 | 50.33 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 35 | 51.48 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 40 | 51.66 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 4 |
| 58 | 52.08 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 9 |
| 59 | 52.09 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 7 |
| 67 | 52.16 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 71 | 52.19 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 87 | 52.40 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 88 | 52.41 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 13 |
| 103 | 52.45 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 3 |
| 131 | 52.58 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 135 | 52.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 147 | 52.69 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 158 | 52.77 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 169 | 52.85 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 173 | 52.88 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 180 | 52.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 5 |
| 184 | 52.93 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 185 | 52.94 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 186 | 52.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 191 | 52.98 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 194 | 52.99 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 197 | 53.02 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 201 | 53.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 241 | 53.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 247 | 53.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 285 | 53.22 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 295 | 53.25 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 300 | 53.26 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 342 | 53.33 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 3 |
| 345 | 53.34 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 10 |
| 356 | 53.37 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 365 | 53.39 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 371 | 53.40 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 411 | 53.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 412 | 53.48 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 414 | 53.49 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 415 | 53.49 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 15 |
| 419 | 53.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 448 | 53.55 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 475 | 53.61 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 480 | 53.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 484 | 53.62 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 496 | 53.64 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 516 | 53.66 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |
| 545 | 53.69 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 558 | 53.70 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 568 | 53.71 | wind | 5 | 43200 | > th | dose independent | sin | 22 | NA |
| 579 | 53.71 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 601 | 53.72 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 14 |
| 616 | 53.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 627 | 53.74 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 824 | 53.86 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 874 | 53.89 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 909 | 53.91 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 928 | 53.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 939 | 53.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 997 | 53.95 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |