Os04g0592700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Quinonprotein alcohol dehydrogenase-like domain containing protein.
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Os04g0592700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Quinonprotein alcohol dehydrogenase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 250.06 | 0.743 | 5.91 | 0.276 | 1.73 | 1.36 | 0.743 | 0.167 | -0.235 | 14.6 | 23.75 | 300 | -- | -- |
| 250.09 | 0.737 | 5.91 | 0.302 | 1.73 | 1.35 | 0.718 | -- | -0.231 | 14.6 | 23.8 | 305 | -- | -- |
| 251.78 | 0.739 | 5.89 | 0.345 | 1.72 | 1.29 | -- | -0.301 | -0.208 | 14.5 | 24 | 295 | -- | -- |
| 251.9 | 0.739 | 5.9 | 0.31 | 1.73 | 1.33 | -- | -- | -0.221 | 14.5 | 23.84 | 292 | -- | -- |
| 384.72 | 0.914 | 5.86 | 0.711 | -- | 1.54 | -- | -1.82 | -0.142 | -- | 35.07 | 1057 | -- | -- |
| 273.16 | 0.775 | 5.95 | -0.0263 | 1.61 | -- | 0.74 | -- | -0.45 | 14.5 | -- | -- | -- | -- |
| 275.13 | 0.777 | 5.95 | -0.00665 | 1.61 | -- | -- | -- | -0.446 | 14.4 | -- | -- | -- | -- |
| 387.18 | 0.916 | 5.9 | 0.384 | -- | 1.57 | -- | -- | -0.218 | -- | 52.07 | 1061 | -- | -- |
| 254.3 | 0.743 | 5.91 | -- | 1.73 | 1.2 | -- | -- | -0.273 | 14.5 | 23.84 | 290 | -- | -- |
| 427.98 | 0.967 | 5.96 | -0.0749 | -- | -- | -- | -- | -0.485 | -- | -- | -- | -- | -- |
| 275.13 | 0.776 | 5.95 | -- | 1.61 | -- | -- | -- | -0.445 | 14.4 | -- | -- | -- | -- |
| 390.6 | 0.92 | 5.91 | -- | -- | 1.41 | -- | -- | -0.282 | -- | 62.73 | 1058 | -- | -- |
| 428.13 | 0.966 | 5.96 | -- | -- | -- | -- | -- | -0.477 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 248.25 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 12 | 249.67 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 13 | 249.67 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 15 | 249.84 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 21 | 250.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 28 | 250.23 | temperature | 25.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 54 | 250.84 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 112 | 251.81 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 129 | 252.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 130 | 252.03 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 161 | 252.27 | temperature | 10.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 163 | 252.28 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 20 |
| 175 | 252.32 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 198 | 252.47 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 202 | 252.50 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 255 | 252.76 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 261 | 252.79 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 308 | 253.07 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 338 | 253.21 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 350 | 253.26 | wind | 3.0 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 367 | 253.32 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 384 | 253.40 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 389 | 253.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 412 | 253.50 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 416 | 253.51 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 446 | 253.62 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 464 | 253.70 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 481 | 253.77 | atmosphere | 1000.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 499 | 253.84 | wind | 3.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 520 | 253.92 | wind | 3.0 | 720 | > th | dose independent | rect. | 24 | 1 |
| 547 | 254.00 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 586 | 254.13 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 626 | 254.22 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 7 |
| 627 | 254.22 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 645 | 254.25 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 654 | 254.26 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 669 | 254.29 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 684 | 254.31 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 779 | 254.50 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 843 | 254.63 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 858 | 254.66 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 860 | 254.66 | temperature | 25.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 861 | 254.66 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 893 | 254.72 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 907 | 254.74 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 974 | 254.83 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 991 | 254.86 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 11 |