Os02g0682500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein).
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Os02g0682500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.06 | 0.312 | 11.1 | 1.97 | 0.468 | -0.817 | -0.503 | 1.92 | 0.655 | 1.25 | 25.8 | 1407 | -- | -- |
| 46.46 | 0.317 | 11.2 | 1.48 | 0.432 | -0.674 | -0.387 | -- | 0.408 | 1.34 | 25.4 | 5944 | -- | -- |
| 45.07 | 0.313 | 11.1 | 1.96 | 0.459 | -0.813 | -- | 1.82 | 0.646 | 1.22 | 25.8 | 1453 | -- | -- |
| 46.12 | 0.316 | 11.2 | 1.47 | 0.428 | -0.747 | -- | -- | 0.408 | 1.07 | 26.4 | 5997 | -- | -- |
| 55.94 | 0.348 | 11.1 | 1.96 | -- | -0.803 | -- | 1.83 | 0.639 | -- | 25.8 | 1592 | -- | -- |
| 61.37 | 0.367 | 11.2 | 1.16 | 0.41 | -- | -0.45 | -- | 0.246 | 1.15 | -- | -- | -- | -- |
| 62.21 | 0.369 | 11.2 | 1.17 | 0.411 | -- | -- | -- | 0.248 | 1.22 | -- | -- | -- | -- |
| 56.13 | 0.35 | 11.2 | 1.29 | -- | -0.414 | -- | -- | 0.366 | -- | 26.4 | 6053 | -- | -- |
| 93.88 | 0.451 | 11.2 | -- | 0.447 | -0.304 | -- | -- | 0.126 | 1.21 | 29.27 | 5861 | -- | -- |
| 72.65 | 0.398 | 11.2 | 1.19 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 98.42 | 0.464 | 11.2 | -- | 0.431 | -- | -- | -- | 0.117 | 1.32 | -- | -- | -- | -- |
| 99.39 | 0.466 | 11.2 | -- | -- | -0.327 | -- | -- | 0.202 | -- | 26.4 | 6053 | -- | -- |
| 109.89 | 0.489 | 11.2 | -- | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.61 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 25 | 43.98 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 28 | 44.03 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 33 | 44.05 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 36 | 44.05 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 59 | 44.20 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 65 | 44.24 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 75 | 44.28 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 92 | 44.35 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 145 | 44.71 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 168 | 44.84 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 169 | 44.85 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 187 | 44.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 209 | 45.03 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 231 | 45.09 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 245 | 45.14 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 262 | 45.17 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 264 | 45.18 | temperature | 25.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 275 | 45.19 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 294 | 45.21 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 322 | 45.25 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 372 | 45.35 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 395 | 45.37 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 424 | 45.38 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 515 | 45.57 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 516 | 45.58 | temperature | 25.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 545 | 45.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 597 | 45.70 | humidity | 90.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 603 | 45.71 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 661 | 45.78 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 709 | 45.86 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 13 |
| 721 | 45.88 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 727 | 45.88 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 742 | 45.90 | humidity | 90.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 749 | 45.90 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 753 | 45.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 754 | 45.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 762 | 45.91 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 865 | 45.99 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 878 | 46.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 879 | 46.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 901 | 46.03 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 913 | 46.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |