BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0682500 Os02g0682500|AK112090
(355 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0682500 Similar to TRANSPARENT TESTA GLABRA 1 protein ... 597 e-171
Os02g0524600 WD40-like domain containing protein 298 4e-81
Os02g0245100 Similar to Peroxisomal targeting signal type 2... 70 2e-12
>Os02g0682500 Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein)
Length = 355
Score = 597 bits (1538), Expect = e-171, Method: Compositional matrix adjust.
Identities = 297/334 (88%), Positives = 297/334 (88%)
Query: 22 FTCELPHSIYALAFSPSAPVLAAGSFLEDLHNRVSLLSFDPVHPTAASFRALPALSFDHP 81
FTCELPHSIYALAFSPSAPVLAAGSFLEDLHNRVSLLSFDPVHPTAASFRALPALSFDHP
Sbjct: 22 FTCELPHSIYALAFSPSAPVLAAGSFLEDLHNRVSLLSFDPVHPTAASFRALPALSFDHP 81
Query: 82 YPPTKLQFHPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLDNRKTSASE 141
YPPTKLQFHPR SVLDNRKTSASE
Sbjct: 82 YPPTKLQFHPRAASAPHLLASSSDALRLWLAPLDDLAATATAAAPELRSVLDNRKTSASE 141
Query: 142 FCAPLTSFDWNEAEPRRIGTASIDTTCTIWDIERGVVETQLIAHDKAVHDIAWGENGIFA 201
FCAPLTSFDWNEAEPRRIGTASIDTTCTIWDIERGVVETQLIAHDKAVHDIAWGENGIFA
Sbjct: 142 FCAPLTSFDWNEAEPRRIGTASIDTTCTIWDIERGVVETQLIAHDKAVHDIAWGENGIFA 201
Query: 202 SVSADGSVRVFDLRDKEHSTIFYESPRPDTPLLRLAWNRYDFHYMATLLMDSSAVVVLDM 261
SVSADGSVRVFDLRDKEHSTIFYESPRPDTPLLRLAWNRYDFHYMATLLMDSSAVVVLDM
Sbjct: 202 SVSADGSVRVFDLRDKEHSTIFYESPRPDTPLLRLAWNRYDFHYMATLLMDSSAVVVLDM 261
Query: 262 RAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDGQALIWELPATPGAVPAEGIDPVM 321
RAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDGQALIWELPATPGAVPAEGIDPVM
Sbjct: 262 RAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDGQALIWELPATPGAVPAEGIDPVM 321
Query: 322 VYDAGAEINQLQWAAAYPEWISIAFENKVQLLRV 355
VYDAGAEINQLQWAAAYPEWISIAFENKVQLLRV
Sbjct: 322 VYDAGAEINQLQWAAAYPEWISIAFENKVQLLRV 355
>Os02g0524600 WD40-like domain containing protein
Length = 424
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 173/383 (45%), Positives = 214/383 (55%), Gaps = 57/383 (14%)
Query: 22 FTCELPHSIYALAFS---PSAPVLAAGSFLEDLHNRVSLLSFDPVHPTAASFRALPALSF 78
+T E IY + +S LA S LE +N V ++ D +S P L+F
Sbjct: 50 YTYEAGWHIYGMNWSVRRDKKYRLAIASLLEQHNNHVQVVQLD-----ESSGDIAPVLTF 104
Query: 79 DHPYPPTKLQF-----------------HPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
DHPYPPTK F H R
Sbjct: 105 DHPYPPTKTMFVPDPHSVRPDLLATSADHLRIWRIPSPDEAAAAAAASSNSGSVRCNGTA 164
Query: 122 XXXXXXXXSVLDNRKTSASEFCAPLTSFDWNEAEPRRIGTASIDTTCTIWDIERGVVETQ 181
+ NR S++C PLTSFDWN+A+PRRIGT+SIDTTCTIWD+ER V+TQ
Sbjct: 165 SPDVELRCELNGNRN---SDYCGPLTSFDWNDADPRRIGTSSIDTTCTIWDVEREAVDTQ 221
Query: 182 LIAHDKAVHDIAWGENGIFASVSADGSVRVFDLRDKEHSTIFYESPRPD----------- 230
LIAHDK V+DIAWG G+FASVSADGSVRVFDLRDKEHSTI YES
Sbjct: 222 LIAHDKEVYDIAWGGAGVFASVSADGSVRVFDLRDKEHSTIIYESGSGGSSNSAGADGGA 281
Query: 231 ---TPLLRLAWNRYDFHYMATLLMDSSAVVVLDMRAPGVPVAELHRHRACANAVAWAPQA 287
TPL+RL WN+ D YMAT++MDS VVVLD+R P +PV ELHRH + NA+AWAP +
Sbjct: 282 ASPTPLVRLGWNKQDPRYMATIIMDSPKVVVLDIRYPTLPVVELHRHHSPVNAIAWAPHS 341
Query: 288 TRHLCSAGDDGQALIWELPA---------------TPGAVPAEGIDPVMVYDAGAEINQL 332
+ H+C+AGDD QALIW+L + A G+DP++ Y AGAEI QL
Sbjct: 342 SCHICTAGDDSQALIWDLSSMGTGSNNGGNGNGNAAAAAAAEGGLDPILAYTAGAEIEQL 401
Query: 333 QWAAAYPEWISIAFENKVQLLRV 355
QW+A P+W++IAF K+Q+LRV
Sbjct: 402 QWSATQPDWVAIAFSTKLQILRV 424
>Os02g0245100 Similar to Peroxisomal targeting signal type 2 receptor
Length = 322
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 141 EFCAPLTSFDWNEAEPRRIGTASIDTTCTIWDIERGVVETQLIAHDKAVHDIAWGEN--G 198
E + DWN +AS D T +W +R H+ V+ AW
Sbjct: 109 EHAREVHGLDWNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPD 168
Query: 199 IFASVSADGSVRVFDLRDKEHSTIFYESPRPDTPLLRLAWNRYDFHYMATLLMDSSAVVV 258
+FAS S D + RV+D+R+ + + P D +L L W++YD +AT +D S + V
Sbjct: 169 VFASASGDRTARVWDVREPAPTLVI---PAHDHEVLSLDWDKYDPSILATGSVDKS-IRV 224
Query: 259 LDMRAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDGQALIWE 304
D+RAP P+A+L H V ++P L S D +W+
Sbjct: 225 WDVRAPRAPLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMWD 270
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,637,801
Number of extensions: 478932
Number of successful extensions: 1497
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1491
Number of HSP's successfully gapped: 3
Length of query: 355
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 253
Effective length of database: 11,709,973
Effective search space: 2962623169
Effective search space used: 2962623169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)