FiT-DB / Search/ Help/ Sample detail

Os06g0143900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Coatomer protein complex, beta prime; beta'-COP protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0119) R2 : 0.000726
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0145 (0.0251) R2dN8 : 0.000937 R2N8 : 0.000726
σ : 0.225
deviance : 23.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.26 0.189 10.1 -0.225 0.313 0.243 -0.777 -0.238 -0.0466 3.14 0.1897 11 -- --
16.48 0.189 10.1 -0.213 0.324 0.244 -0.593 -- -0.0398 3.21 0.17 13 -- --
17.39 0.194 10.1 -0.255 0.314 0.244 -- 0.0918 -0.0551 3.13 0.1619 17 -- --
17.42 0.194 10.1 -0.213 0.313 0.247 -- -- -0.0411 3.03 0.14 17 -- --
20.88 0.214 10.1 -0.185 -- 0.111 -- 0.117 -0.0328 -- 0.1619 17 -- --
18.23 0.2 10.1 -0.181 0.251 -- -0.609 -- -0.0421 6.27 -- -- -- --
18.99 0.204 10 -0.187 0.253 -- -- -- -0.0392 7.04 -- -- -- --
20.97 0.214 10.1 -0.187 -- 0.111 -- -- -0.0334 -- 0.1619 17 -- --
18.61 0.201 10 -- 0.322 0.246 -- -- -0.0299 3.07 0.17 17 -- --
22.36 0.221 10.1 -0.182 -- -- -- -- -0.0346 -- -- -- -- --
19.91 0.209 10 -- 0.251 -- -- -- -0.0184 7.09 -- -- -- --
21.88 0.219 10.1 -- -- 0.108 -- -- -0.0185 -- 1.64 7 -- --
23.23 0.225 10 -- -- -- -- -- -0.0145 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.22 atmosphere 1005.0 10 > th dose dependent rect. 24 5
2 15.28 temperature 20.0 720 > th dose independent rect. 5 1
3 15.32 atmosphere 995.0 30 > th dose dependent rect. 18 11
4 15.35 humidity 50.0 30 > th dose dependent rect. 5 6
10 15.44 humidity 80.0 270 > th dose dependent rect. 5 1
11 15.46 wind 5.0 30 < th dose independent rect. 11 18
12 15.47 radiation 1.0 10 > th dose independent rect. 12 23
13 15.53 wind 1.0 90 > th dose independent rect. 10 19
20 15.58 humidity 80.0 270 > th dose dependent rect. 3 4
22 15.60 atmosphere 1005.0 30 > th dose independent rect. 18 11
25 15.61 temperature 20.0 30 > th dose independent rect. 5 6
27 15.61 wind 9.0 30 < th dose dependent rect. 5 6
31 15.64 temperature 25.0 270 > th dose independent rect. 24 2
35 15.65 wind 1.0 270 > th dose independent rect. 7 22
37 15.65 atmosphere 1005.0 270 > th dose dependent rect. 23 4
38 15.66 wind 9.0 10 < th dose independent rect. 5 6
39 15.66 temperature 10.0 10 > th dose independent rect. 5 6
41 15.66 humidity 50.0 10 > th dose independent rect. 5 6
42 15.66 atmosphere 995.0 10 > th dose independent rect. 5 6
43 15.66 atmosphere 1015.0 10 < th dose independent rect. 5 6
44 15.66 precipitation 0.1 10 < th dose independent rect. 5 6
45 15.66 temperature 10.0 10 > th dose independent rect. 11 18
47 15.66 precipitation 0.1 10 < th dose dependent rect. 5 6
62 15.69 wind 9.0 10 < th dose independent rect. 11 18
72 15.73 temperature 10.0 10 > th dose dependent rect. 5 6
74 15.74 radiation 1.0 1440 < th dose independent rect. 13 1
76 15.74 temperature 25.0 90 > th dose independent rect. 24 5
79 15.74 radiation 1.0 10 < th dose dependent sin 10 NA
80 15.74 temperature 10.0 270 > th dose dependent rect. 5 1
81 15.74 radiation 1.0 1440 < th dose dependent rect. 13 1
85 15.75 precipitation 0.1 10 < th dose independent rect. 11 18
88 15.75 wind 9.0 10 < th dose dependent rect. 11 18
89 15.75 precipitation 0.1 10 < th dose dependent rect. 11 18
96 15.77 atmosphere 995.0 10 > th dose independent rect. 11 18
100 15.78 radiation 1.0 1440 > th dose independent rect. 12 2
105 15.79 humidity 90.0 270 > th dose independent rect. 3 4
109 15.80 radiation 10.0 270 < th dose independent rect. 5 1
121 15.81 radiation 30.0 10 < th dose independent rect. 5 6
129 15.82 radiation 1.0 10 < th dose independent sin 10 NA
130 15.82 humidity 80.0 270 > th dose independent rect. 5 1
131 15.82 atmosphere 1010.0 270 < th dose independent rect. 5 1
155 15.84 wind 9.0 270 < th dose dependent rect. 5 1
170 15.86 wind 1.0 90 > th dose independent rect. 23 6
172 15.86 atmosphere 1015.0 10 < th dose independent rect. 11 18
177 15.87 radiation 1.0 10 > th dose independent rect. 5 6
191 15.88 radiation 1.0 10 > th dose independent sin 10 NA
192 15.88 wind 7.0 270 < th dose independent rect. 5 1
194 15.88 temperature 10.0 270 > th dose independent rect. 5 1
196 15.88 temperature 30.0 270 < th dose independent rect. 5 1
197 15.88 humidity 50.0 270 > th dose independent rect. 5 1
200 15.88 atmosphere 995.0 270 > th dose independent rect. 5 1
205 15.88 precipitation 0.1 270 < th dose independent rect. 5 1
216 15.88 temperature 10.0 270 > th dose independent rect. 6 23
217 15.88 precipitation 0.1 270 < th dose dependent rect. 5 1
229 15.89 radiation 30.0 270 < th dose dependent rect. 5 1
249 15.92 temperature 30.0 10 < th dose independent rect. 5 6
253 15.92 radiation 1.0 10 > th dose independent rect. 14 21
265 15.93 temperature 20.0 10 > th dose dependent rect. 24 5
266 15.93 temperature 25.0 270 > th dose dependent rect. 24 5
289 15.96 wind 1.0 270 > th dose independent rect. 7 20
291 15.96 temperature 25.0 270 > th dose dependent rect. 24 2
304 15.97 wind 5.0 30 < th dose independent rect. 18 11
307 15.97 precipitation 0.1 270 < th dose independent rect. 7 20
314 15.97 precipitation 0.1 270 < th dose dependent rect. 7 20
316 15.98 atmosphere 1005.0 10 > th dose independent rect. 24 5
329 15.99 temperature 25.0 270 < th dose independent rect. 22 9
342 16.00 humidity 60.0 10 > th dose independent rect. 18 11
347 16.00 wind 9.0 270 < th dose dependent rect. 3 4
350 16.01 radiation 20.0 270 < th dose independent rect. 3 4
363 16.01 radiation 1.0 30 < th dose independent rect. 18 11
378 16.02 precipitation 0.1 270 < th dose independent rect. 3 4
384 16.02 precipitation 0.1 270 < th dose dependent rect. 3 4
386 16.02 radiation 40.0 30 < th dose dependent rect. 5 6
390 16.03 wind 9.0 270 < th dose independent rect. 3 4
391 16.03 temperature 10.0 270 > th dose independent rect. 3 4
395 16.03 temperature 30.0 270 < th dose independent rect. 3 4
396 16.03 humidity 50.0 270 > th dose independent rect. 3 4
398 16.03 atmosphere 995.0 270 > th dose independent rect. 3 4
399 16.03 atmosphere 1015.0 270 < th dose independent rect. 3 4
404 16.03 temperature 10.0 270 > th dose independent rect. 7 20
406 16.03 atmosphere 995.0 720 > th dose dependent rect. 17 1
416 16.03 radiation 1.0 30 < th dose dependent rect. 18 11
424 16.04 humidity 50.0 10 > th dose independent rect. 11 18
425 16.04 wind 9.0 270 < th dose independent rect. 6 23
429 16.04 temperature 10.0 270 > th dose dependent rect. 4 3
436 16.04 humidity 90.0 270 > th dose dependent rect. 3 10
437 16.04 radiation 40.0 30 < th dose dependent rect. 11 18
453 16.05 wind 9.0 30 < th dose independent rect. 5 13
459 16.05 wind 9.0 270 < th dose independent rect. 7 20
460 16.05 precipitation 0.1 270 < th dose independent rect. 6 23
461 16.05 humidity 90.0 270 > th dose dependent sin 5 NA
469 16.05 precipitation 0.1 270 < th dose dependent rect. 6 23
473 16.06 temperature 20.0 30 > th dose independent rect. 5 13
475 16.06 temperature 20.0 30 > th dose independent rect. 5 18
484 16.06 wind 9.0 30 < th dose dependent rect. 18 11
487 16.07 atmosphere 1005.0 720 > th dose independent rect. 17 1
495 16.07 radiation 1.0 10 > th dose independent rect. 16 19
501 16.07 atmosphere 995.0 10 > th dose dependent rect. 5 6
528 16.08 radiation 1.0 30 < th dose dependent rect. 16 13
530 16.08 temperature 10.0 10 > th dose dependent rect. 5 18
533 16.09 humidity 90.0 270 < th dose independent rect. 23 3
537 16.09 temperature 10.0 30 > th dose independent rect. 18 11
539 16.09 atmosphere 995.0 30 > th dose independent rect. 18 11
545 16.09 temperature 10.0 30 > th dose independent rect. 5 13
547 16.09 atmosphere 1015.0 30 < th dose independent rect. 5 13
548 16.09 precipitation 0.1 30 < th dose independent rect. 5 13
556 16.09 precipitation 0.1 30 < th dose dependent rect. 5 13
566 16.10 wind 9.0 30 < th dose independent rect. 18 11
567 16.10 temperature 30.0 10 < th dose independent rect. 11 18
570 16.10 radiation 40.0 270 < th dose dependent rect. 3 4
583 16.11 atmosphere 1005.0 270 > th dose independent rect. 23 2
613 16.11 humidity 90.0 270 > th dose dependent rect. 3 16
622 16.12 wind 1.0 720 > th dose independent rect. 16 9
623 16.12 precipitation 0.1 30 < th dose independent rect. 18 11
624 16.12 radiation 1.0 30 < th dose independent rect. 15 14
642 16.12 precipitation 0.1 30 < th dose dependent rect. 18 11
644 16.12 radiation 1.0 30 < th dose dependent rect. 6 23
688 16.14 atmosphere 995.0 30 > th dose independent rect. 5 13
711 16.15 temperature 30.0 10 < th dose independent rect. 18 11
729 16.15 radiation 1.0 30 < th dose dependent rect. 11 18
742 16.16 wind 1.0 90 > th dose independent rect. 18 11
779 16.18 humidity 50.0 30 > th dose independent rect. 5 13
781 16.18 radiation 1.0 30 < th dose independent rect. 11 18
795 16.18 temperature 10.0 10 > th dose dependent rect. 23 6
797 16.18 atmosphere 1015.0 10 < th dose dependent rect. 5 6
820 16.19 temperature 10.0 30 > th dose dependent rect. 5 13
827 16.20 wind 7.0 720 < th dose independent rect. 17 1
852 16.20 temperature 20.0 720 > th dose independent rect. 3 13
853 16.20 temperature 20.0 30 > th dose independent rect. 5 15
877 16.20 radiation 1.0 10 < th dose dependent rect. 18 18
950 16.22 temperature 15.0 270 > th dose independent rect. 1 22
979 16.23 wind 5.0 30 < th dose independent rect. 23 6
994 16.23 atmosphere 1015.0 270 < th dose dependent rect. 19 12
1000 16.24 wind 5.0 270 < th dose independent rect. 23 2