Os05g0571000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0571000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.73 | 0.256 | 11.4 | 0.717 | 2.04 | 0.54 | -0.141 | 3.13 | 0.0169 | 5.56 | 19.7 | 11224 | -- | -- |
| 31.55 | 0.262 | 11.5 | 0.708 | 2.04 | -0.586 | -0.0968 | -- | -0.0224 | 5.55 | 9.6 | 47520 | -- | -- |
| 29.71 | 0.254 | 11.4 | 0.691 | 2.04 | 0.585 | -- | 3.2 | 0.0139 | 5.56 | 19.7 | 11530 | -- | -- |
| 30.84 | 0.259 | 11.5 | 0.708 | 2.04 | -0.594 | -- | -- | -0.0232 | 5.53 | 9.499 | 43700 | -- | -- |
| 245.18 | 0.729 | 11.3 | 0.514 | -- | 0.846 | -- | 3.58 | 0.0429 | -- | 20.4 | 30180 | -- | -- |
| 38.04 | 0.289 | 11.5 | 0.31 | 2.04 | -- | -0.102 | -- | -0.131 | 5.56 | -- | -- | -- | -- |
| 38.06 | 0.289 | 11.5 | 0.31 | 2.04 | -- | -- | -- | -0.131 | 5.56 | -- | -- | -- | -- |
| 247.6 | 0.736 | 11.6 | 0.482 | -- | -0.405 | -- | -- | -0.00628 | -- | 20.4 | 30180 | -- | -- |
| 39.32 | 0.292 | 11.5 | -- | 2.05 | -0.201 | -- | -- | -0.146 | 5.55 | 8.453 | 47520 | -- | -- |
| 255.01 | 0.746 | 11.6 | 0.376 | -- | -- | -- | -- | -0.0814 | -- | -- | -- | -- | -- |
| 40.59 | 0.298 | 11.6 | -- | 2.05 | -- | -- | -- | -0.165 | 5.55 | -- | -- | -- | -- |
| 219.2 | 0.692 | 11.5 | -- | -- | -0.639 | -- | -- | 0.0398 | -- | 26.5 | 47520 | -- | -- |
| 258.75 | 0.751 | 11.6 | -- | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 7 | 28.72 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 8 | 28.72 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 12 |
| 13 | 28.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 27 | 28.88 | humidity | 90.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 40 | 28.94 | humidity | 90.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 46 | 28.96 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 51 | 28.98 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 65 | 29.00 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 82 | 29.04 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 90 | 29.07 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 117 | 29.12 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 125 | 29.13 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 130 | 29.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 161 | 29.19 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 162 | 29.19 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 165 | 29.19 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 177 | 29.21 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 183 | 29.21 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 15 |
| 185 | 29.22 | wind | 7.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 254 | 29.28 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 262 | 29.28 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 24 | 12 |
| 267 | 29.29 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 282 | 29.30 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 304 | 29.31 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 334 | 29.34 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 358 | 29.36 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 365 | 29.36 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 370 | 29.36 | wind | 5.0 | 43200 | > th | dose dependent | sin | 7 | NA |
| 379 | 29.37 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 414 | 29.39 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 424 | 29.39 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 429 | 29.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 433 | 29.40 | wind | 5.0 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 434 | 29.40 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 447 | 29.40 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 448 | 29.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 451 | 29.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 460 | 29.41 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 11 | 12 |
| 476 | 29.42 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 506 | 29.43 | temperature | 20.0 | 43200 | > th | dose independent | sin | 20 | NA |
| 510 | 29.43 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 535 | 29.44 | wind | 5.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 568 | 29.45 | wind | 5.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 570 | 29.45 | temperature | 20.0 | 43200 | < th | dose independent | sin | 20 | NA |
| 581 | 29.45 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 659 | 29.47 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 668 | 29.48 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 670 | 29.48 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 693 | 29.48 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 20 |
| 698 | 29.48 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 712 | 29.49 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 760 | 29.50 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 927 | 29.55 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 9 | 17 |
| 929 | 29.56 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 956 | 29.56 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 15 |
| 959 | 29.56 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 21 |
| 964 | 29.57 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 18 | 5 |