BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0571000 Os05g0571000|AK111749
(1144 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0571000 Protein kinase-like domain containing protein 2258 0.0
Os02g0771100 Similar to COP1 (Fragment) 330 3e-90
Os01g0725800 Protein kinase domain containing protein 300 6e-81
AK063441 170 6e-42
Os02g0114900 124 4e-28
Os01g0924300 WD40-like domain containing protein 73 1e-12
Os02g0245100 Similar to Peroxisomal targeting signal type 2... 73 2e-12
Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding ... 69 2e-11
>Os05g0571000 Protein kinase-like domain containing protein
Length = 1144
Score = 2258 bits (5852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1091/1144 (95%), Positives = 1091/1144 (95%)
Query: 1 MAGTHGFRRXXXXXXXXXXXXXXXXXXSGTDGDLQIKGSKENGQTAEQPAASEALEMPST 60
MAGTHGFRR SGTDGDLQIKGSKENGQTAEQPAASEALEMPST
Sbjct: 1 MAGTHGFRRVGVVEMEAATAAEVAGAGSGTDGDLQIKGSKENGQTAEQPAASEALEMPST 60
Query: 61 PLPLPRDIDWSEHXXXXXXXXXXXXXMDGARGLTSVGLSNSESRPDSVTQIQSCLNNADE 120
PLPLPRDIDWSEH MDGARGLTSVGLSNSESRPDSVTQIQSCLNNADE
Sbjct: 61 PLPLPRDIDWSEHFSFFNSVGGFGGSMDGARGLTSVGLSNSESRPDSVTQIQSCLNNADE 120
Query: 121 RVEELTLKNCISSDAQHEVSAGGSTSSGEKPTVMRGLWGNFTRMSWRASDVANREKLAAN 180
RVEELTLKNCISSDAQHEVSAGGSTSSGEKPTVMRGLWGNFTRMSWRASDVANREKLAAN
Sbjct: 121 RVEELTLKNCISSDAQHEVSAGGSTSSGEKPTVMRGLWGNFTRMSWRASDVANREKLAAN 180
Query: 181 RGDVANLRVGDMPIRENLAVSFGNNMISRNDASNKEMGMSHGDHANNEFNLPFGNQQPFL 240
RGDVANLRVGDMPIRENLAVSFGNNMISRNDASNKEMGMSHGDHANNEFNLPFGNQQPFL
Sbjct: 181 RGDVANLRVGDMPIRENLAVSFGNNMISRNDASNKEMGMSHGDHANNEFNLPFGNQQPFL 240
Query: 241 SPRPNQNEQRVERENALIVSSFSARILDQMRSKNVTPSSGVQSFPFKSVLKGKGVVYQGA 300
SPRPNQNEQRVERENALIVSSFSARILDQMRSKNVTPSSGVQSFPFKSVLKGKGVVYQGA
Sbjct: 241 SPRPNQNEQRVERENALIVSSFSARILDQMRSKNVTPSSGVQSFPFKSVLKGKGVVYQGA 300
Query: 301 REEIQVQGNARTRAPMDKIRKIPNIPQDSMARMDGTIFGSGGNVLEPQCEGTSLRELIKP 360
REEIQVQGNARTRAPMDKIRKIPNIPQDSMARMDGTIFGSGGNVLEPQCEGTSLRELIKP
Sbjct: 301 REEIQVQGNARTRAPMDKIRKIPNIPQDSMARMDGTIFGSGGNVLEPQCEGTSLRELIKP 360
Query: 361 ARQTMSKFEKMHFFKQILDLVDKSHAQGFSLQHLRPSYFTISASNQVKYIGSYGTQDLSA 420
ARQTMSKFEKMHFFKQILDLVDKSHAQGFSLQHLRPSYFTISASNQVKYIGSYGTQDLSA
Sbjct: 361 ARQTMSKFEKMHFFKQILDLVDKSHAQGFSLQHLRPSYFTISASNQVKYIGSYGTQDLSA 420
Query: 421 PSKLDIATDDIFNTKRYLDPKVESQDSNGDNASITKYQKVGEQGSIAVRRPVHTFWANHR 480
PSKLDIATDDIFNTKRYLDPKVESQDSNGDNASITKYQKVGEQGSIAVRRPVHTFWANHR
Sbjct: 421 PSKLDIATDDIFNTKRYLDPKVESQDSNGDNASITKYQKVGEQGSIAVRRPVHTFWANHR 480
Query: 481 GGNQSEGVDPGALWQGNSSCTVRERFKAAEPFYGGSMPYAQRPSSSGNQQSVFELRMLEE 540
GGNQSEGVDPGALWQGNSSCTVRERFKAAEPFYGGSMPYAQRPSSSGNQQSVFELRMLEE
Sbjct: 481 GGNQSEGVDPGALWQGNSSCTVRERFKAAEPFYGGSMPYAQRPSSSGNQQSVFELRMLEE 540
Query: 541 SWYRSPEEISQLKGILPSNIYSLGVLLFELFCCCETWEVHCAAMSDLRHRILPPNFLSES 600
SWYRSPEEISQLKGILPSNIYSLGVLLFELFCCCETWEVHCAAMSDLRHRILPPNFLSES
Sbjct: 541 SWYRSPEEISQLKGILPSNIYSLGVLLFELFCCCETWEVHCAAMSDLRHRILPPNFLSES 600
Query: 601 PKEAGFCLWLLHPDPCSRPKARDILGCDLINEGRDLSLLDNKTPVAVNEEDTESGLLLGF 660
PKEAGFCLWLLHPDPCSRPKARDILGCDLINEGRDLSLLDNKTPVAVNEEDTESGLLLGF
Sbjct: 601 PKEAGFCLWLLHPDPCSRPKARDILGCDLINEGRDLSLLDNKTPVAVNEEDTESGLLLGF 660
Query: 661 LSQLKEEKEMHAAKLSADLASLETDIAEVEKRHSMRMGFSLEDMDVLAGSNDXXXXXXXX 720
LSQLKEEKEMHAAKLSADLASLETDIAEVEKRHSMRMGFSLEDMDVLAGSND
Sbjct: 661 LSQLKEEKEMHAAKLSADLASLETDIAEVEKRHSMRMGFSLEDMDVLAGSNDLSGASACA 720
Query: 721 XXXXXXXXXXXXXXRSSIYEERVMRNLEQLENAYYSMRSTIDTSEANIIKRVDNDALRVR 780
RSSIYEERVMRNLEQLENAYYSMRSTIDTSEANIIKRVDNDALRVR
Sbjct: 721 LGGASLSGLPPSLCRSSIYEERVMRNLEQLENAYYSMRSTIDTSEANIIKRVDNDALRVR 780
Query: 781 QNFHELHSDANAIDEQADPLGWFFDGLCKYARYSRFEVRGILKNADILNSPNVICSLSFD 840
QNFHELHSDANAIDEQADPLGWFFDGLCKYARYSRFEVRGILKNADILNSPNVICSLSFD
Sbjct: 781 QNFHELHSDANAIDEQADPLGWFFDGLCKYARYSRFEVRGILKNADILNSPNVICSLSFD 840
Query: 841 RDEEYFAAAGVSKKIKIFEFDALLNDRVDIHYPLIEMPSKSKLSCVCWNSYIKNYLASTD 900
RDEEYFAAAGVSKKIKIFEFDALLNDRVDIHYPLIEMPSKSKLSCVCWNSYIKNYLASTD
Sbjct: 841 RDEEYFAAAGVSKKIKIFEFDALLNDRVDIHYPLIEMPSKSKLSCVCWNSYIKNYLASTD 900
Query: 901 YDGTVQLWDASSGQGFTQFTEHRKRAWSVSFSEVDPTKLASGSDDCCVKVWSINQKNCTD 960
YDGTVQLWDASSGQGFTQFTEHRKRAWSVSFSEVDPTKLASGSDDCCVKVWSINQKNCTD
Sbjct: 901 YDGTVQLWDASSGQGFTQFTEHRKRAWSVSFSEVDPTKLASGSDDCCVKVWSINQKNCTD 960
Query: 961 TIRNVANVCCVQFSPYSSRMLAFGSADYKIYCYDLRNTRIPWCTISGHGKAVSYVRFLDP 1020
TIRNVANVCCVQFSPYSSRMLAFGSADYKIYCYDLRNTRIPWCTISGHGKAVSYVRFLDP
Sbjct: 961 TIRNVANVCCVQFSPYSSRMLAFGSADYKIYCYDLRNTRIPWCTISGHGKAVSYVRFLDP 1020
Query: 1021 ETLISASTDNTLKIWDLNQTNSSGLSTDACSMTLSGHTNEKNFVGLSVHDGYITCGSENN 1080
ETLISASTDNTLKIWDLNQTNSSGLSTDACSMTLSGHTNEKNFVGLSVHDGYITCGSENN
Sbjct: 1021 ETLISASTDNTLKIWDLNQTNSSGLSTDACSMTLSGHTNEKNFVGLSVHDGYITCGSENN 1080
Query: 1081 EVFSYYKTFPMPITSHKFGSIDPITGQETNDDNQQFVSSVCWRGRSNMVVAANSTGSIKV 1140
EVFSYYKTFPMPITSHKFGSIDPITGQETNDDNQQFVSSVCWRGRSNMVVAANSTGSIKV
Sbjct: 1081 EVFSYYKTFPMPITSHKFGSIDPITGQETNDDNQQFVSSVCWRGRSNMVVAANSTGSIKV 1140
Query: 1141 LELV 1144
LELV
Sbjct: 1141 LELV 1144
>Os02g0771100 Similar to COP1 (Fragment)
Length = 685
Score = 330 bits (847), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 219/342 (64%), Gaps = 12/342 (3%)
Query: 803 FFDGLCKYARYSRFEVRGILKNADILNSPNVICSLSFDRDEEYFAAAGVSKKIKIFEFDA 862
F L + RYSR V L++ D+ +S N++ S+ FDRD+E FA AGVSK+IK+FEF
Sbjct: 353 FQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFST 412
Query: 863 LLNDRVDIHYPLIEMPSKSKLSCVCWNSYIKNYLASTDYDGTVQLWDASSGQGFTQFTEH 922
++N+ D+H P++EM ++SKLSC+ WN Y KN +AS+DY+G V +WD + Q ++ EH
Sbjct: 413 VVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEH 472
Query: 923 RKRAWSVSFSEVDPTKLASGSDDCCVKVWSINQKNCTDTIRNVANVCCVQFSPYSSRMLA 982
KRAWSV FS +P+ L SGSDDC VKVW Q+ I AN+C V+++P SS +A
Sbjct: 473 EKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTKQEASAINIDMKANICSVKYNPGSSHYVA 532
Query: 983 FGSADYKIYCYDLRNTRIPWCTISGHGKAVSYVRFLDPETLISASTDNTLKIWDLNQTNS 1042
GSAD+ I+ +DLRN P GH KAVSYV+FL L SASTD+TL++WD+ +
Sbjct: 533 VGSADHHIHYFDLRNPSAPVHVFGGHKKAVSYVKFLSTNELASASTDSTLRLWDVKEN-- 590
Query: 1043 SGLSTDACSM-TLSGHTNEKNFVGLSVHDGYITCGSENNEVFSYYKTFPMPITSHKFGSI 1101
C + T GH NEKNFVGLSV++ YI CGSE NEVF Y+K P +H+F +
Sbjct: 591 -------CPVRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPAANHRF--V 641
Query: 1102 DPITGQETNDDNQQFVSSVCWRGRSNMVVAANSTGSIKVLEL 1143
+D F+S+VCW+ S ++ ANS G+IKVL L
Sbjct: 642 SSDLDDADDDPGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 683
>Os01g0725800 Protein kinase domain containing protein
Length = 628
Score = 300 bits (767), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 177/452 (39%), Positives = 260/452 (57%), Gaps = 37/452 (8%)
Query: 538 LEESWYRSPEEISQLKG-ILPSNIYSLGVLLFELFCCCETWEVHCAAMSDLRHRILPPNF 596
+E +WY SPEE G S++Y LGVLLFELFC ET E AM++LRHR+LPP
Sbjct: 168 MELTWYTSPEEADDRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQL 227
Query: 597 LSESPKEAGFCLWLLHPDPCSRPKARDILGCDLINEGRDLSLLDNKTPVAVNEEDTESGL 656
L + PKEA FC L+HP P +RPK D+L + +N R+ SL + + + + EE E L
Sbjct: 228 LLKWPKEASFCQLLMHPVPETRPKMSDVLQSEFLNRSRN-SLEEREAALRLREEIEEQEL 286
Query: 657 LLGFLSQLKEEKEMHAAKLSADLASLETDIAEVEKRHSMRM--GFSLE-DMDVLAGSNDX 713
LL FL QL+ K+ A L +A L +DI E ++ ++ FS E D +V + + +
Sbjct: 287 LLDFLLQLQRRKQDIADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKEVCSETVED 346
Query: 714 XXXXXXXXXXXXXXXXXXXXXRSSIYEE--------------------RVMRNLEQLENA 753
++ EE R+M+N ++LE A
Sbjct: 347 QSDCGSRKRFRPELPAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETA 406
Query: 754 YYSMRSTIDTSEANIIKRVDNDALRVRQNFHELHSDANAIDEQA-------DPLGW---F 803
Y+ RS + N + R + + ++ ++ID+ A GW F
Sbjct: 407 YFLTRSKLAKQVGNPVSSCHQVVKRTTGS--PVVTEGSSIDDFALEGHYGTRQRGWMNSF 464
Query: 804 FDGLCKYARYSRFEVRGILKNADILNSPNVICSLSFDRDEEYFAAAGVSKKIKIFEFDAL 863
+GLC Y +S+ +V+ LK D+LNS N++CS+ FDRD+E+FA AGV+KKIK+FE++ +
Sbjct: 465 LEGLCSYLSFSKLKVKAELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVFEYNMI 524
Query: 864 LNDRVDIHYPLIEMPSKSKLSCVCWNSYIKNYLASTDYDGTVQLWDASSGQGFTQFTEHR 923
+N+ DIHYP++EM ++SKLSC+CWNSY+K+++AS+D++G VQ+WD + Q F + EH
Sbjct: 525 VNEHCDIHYPVVEMSNRSKLSCICWNSYMKSHIASSDFEGIVQVWDVTRSQVFVEMREHE 584
Query: 924 KRAWSVSFSEVDPTKLASGSDDCCVKVWSINQ 955
+R WSV FS DPTKL SGSDD VK+W++NQ
Sbjct: 585 RRVWSVDFSLADPTKLVSGSDDGSVKLWNMNQ 616
>AK063441
Length = 488
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 127/363 (34%), Positives = 186/363 (51%), Gaps = 40/363 (11%)
Query: 533 FELR---MLEESWYRSPEEISQLKG-ILPSNIYSLGVLLFELFCCCETWEVHCAAMSDLR 588
F LR +E +WY SPEE G S++Y LGVLLFELFC ET E AM++LR
Sbjct: 129 FPLRSVLAMELTWYTSPEEADDRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLR 188
Query: 589 HRILPPNFLSESPKEAGFCLWLLHPDPCSRPKARDILGCDLINEGRDLSLLDNKTPVAVN 648
HR+LPP L + PKEA FC L+HP P +RPK D+L + +N R+ SL + + + +
Sbjct: 189 HRVLPPQLLLKWPKEASFCQLLMHPVPETRPKMSDVLQSEFLNRSRN-SLEEREAALRLR 247
Query: 649 EEDTESGLLLGFLSQLKEEKEMHAAKLSADLASLETDIAEVEKRHSMRM--GFSLE-DMD 705
EE E LLL FL QL+ K+ A L +A L +DI E ++ ++ FS E D +
Sbjct: 248 EEIEEQELLLDFLLQLQRRKQDIADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKE 307
Query: 706 VLAGSNDXXXXXXXXXXXXXXXXXXXXXXRSSIYEE--------------------RVMR 745
V + + + ++ EE R+M+
Sbjct: 308 VCSETVEDQSDCGSRKRFRPELPAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMK 367
Query: 746 NLEQLENAYYSMRSTIDTSEANIIKRVDNDALRVRQNFHELHSDANAIDEQA-------D 798
N ++LE AY+ RS + N + R + + ++ ++ID+ A
Sbjct: 368 NFKKLETAYFLTRSKLAKQVGNPVSSCHQVVKRTTGS--PVVTEGSSIDDFALEGHYGTR 425
Query: 799 PLGW---FFDGLCKYARYSRFEVRGILKNADILNSPNVICSLSFDRDEEYFAAAGVSKKI 855
GW F +GLC Y +S+ +V+ LK D+LNS N++CS+ FDRD+E+FA AGV+KKI
Sbjct: 426 QRGWMNSFLEGLCSYLSFSKLKVKAELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKI 485
Query: 856 KIF 858
K+F
Sbjct: 486 KVF 488
>Os02g0114900
Length = 404
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 154/347 (44%), Gaps = 41/347 (11%)
Query: 816 FEVRGILKNADILNSPNVICSLSFDRDEEYFAAAGVSKKIKIFEFDALLNDRVDIHYPLI 875
F + + + + + + I SL FD + A G+++KI+I+ + P
Sbjct: 55 FRLAATVPSPALAGASDSIGSLDFDPTGRHLATGGIARKIRIYRV-------AEPSSPAA 107
Query: 876 EMPSKSKLSCVCWN-----SYIKNYLASTDYDGTVQLWDASSGQGFTQFTEHR-KRAWSV 929
+ +KLS V W + +++ DYDG V +D G + EH +R W++
Sbjct: 108 CICVPAKLSSVRWRPGGGEAVAASHVGCGDYDGVVTEYDVERGVPVWERDEHEGRRVWAL 167
Query: 930 SFSEVD--PTKLASGSDDCCVKVWS----INQKNCTDTIRNVANVCCVQFSPYSSRMLAF 983
++ T +ASGSDD VW T R V CV+F P LA
Sbjct: 168 DYARGGGAATMVASGSDDRTAHVWDPRAPAGAAGSWATARAGGAVLCVEFDPAGGPQLAV 227
Query: 984 GSADYKIYCYDLRN-TRIPWCTISGHGKAVSYVRF-LDPETLISASTDNTLKIWDLNQTN 1041
GSAD + +D+R R ++ GHG+AV+YVR+ +++++ D T ++W L
Sbjct: 228 GSADRRAAVHDVRALGRGAVASMDGHGRAVTYVRWAATARRVVTSAADGTHRLWALPAPA 287
Query: 1042 SSGLSTDACSMTLSGHTNEKNFVGLSV--HDGYITCGSENNEVFSYYKTFPMPITSHKFG 1099
++ + + SGH + ++FVG+ V G I GSE+ VF Y + PI H F
Sbjct: 288 AAETAAREV-RSYSGHVSGRSFVGMGVWRGAGLIASGSESGHVFVYDLRWSKPIWVHPFS 346
Query: 1100 SIDPITGQETNDDNQQFVSSVCWRGRS-----NMVVAANSTGSIKVL 1141
D FVS+V WR + +VA S G +K+
Sbjct: 347 HAD------------AFVSAVAWRQLAGDDSDGQLVAGGSDGVLKLF 381
>Os01g0924300 WD40-like domain containing protein
Length = 487
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 15/229 (6%)
Query: 880 KSKLSCVCWNSYIKNYLASTDYDGTVQLWDASSGQGFTQFTEHRKRAWSVSFSEVDPTKL 939
+S + + WN ++N LAS D TV++WD S G+ H + SV++S P L
Sbjct: 264 RSSVLGLAWNKEVRNVLASASADKTVKIWDVSVGKCAVTLEHHDDKVQSVAWSRQSPEVL 323
Query: 940 ASGSDDCCVKVWSINQKNCTDTIRNV-ANVCCVQFSPYSSRMLAFGSADYKIYCYDLR-- 996
SGS D V + + + +V A+V + + P++ + + +D R
Sbjct: 324 LSGSFDKSVAMNDMKDGGQSCNKWSVEADVESLAWDPHNEHSFMVSLENGMVQAFDKRTA 383
Query: 997 ----NTRIPWCTISGHGKAVSYVRF--LDPETLISASTDNTLKIWDLNQTNSSGLSTDAC 1050
N+ P T+ H KAVS + F P L + STD +K+WDL+ S C
Sbjct: 384 SSNSNSGRPTFTLHAHEKAVSSISFSPSTPNFLATGSTDKMVKLWDLSNNQPS------C 437
Query: 1051 SMTLSGHTNEKNFVGLSVHDGYITCGSENNEVFSYYKTFPMPITSHKFG 1099
+L+ V S ++ + + T P ++KFG
Sbjct: 438 IASLNPKLGAIFSVSFSNDSPFLLASGGSKGKLKVWNTLTEPAVANKFG 486
>Os02g0245100 Similar to Peroxisomal targeting signal type 2 receptor
Length = 322
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 888 WNSYIKNYLASTDYDGTVQLWDASSGQGFTQFTEHRKRAWSVSFSEVDPTKLASGSDDCC 947
WN ++ S +D T++LW F H ++ ++S P AS S D
Sbjct: 119 WNPVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRT 178
Query: 948 VKVWSINQKNCTDTI-RNVANVCCVQFSPYSSRMLAFGSADYKIYCYDLRNTRIPWCTIS 1006
+VW + + T I + V + + Y +LA GS D I +D+R R P ++
Sbjct: 179 ARVWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLA 238
Query: 1007 GHGKAVSYVRFLDPE---TLISASTDNTLKIWDLNQTNS 1042
GHG AV V+F P L+S S D T+ +WD + ++
Sbjct: 239 GHGYAVKRVKF-SPHRQGMLMSCSYDMTVCMWDYRKEDA 276
>Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5
snRNP- specific 40 kDa protein) (38 kDa splicing factor)
Length = 343
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 21/226 (9%)
Query: 896 LASTDYDGTVQLWDASSGQGFTQFTEHRKRAWSVSFSEVDPTKLASGSDDCCVKVWSINQ 955
+ S D TV++WD +G+ + EH S + P + SGSDD K+W + Q
Sbjct: 111 IISASPDKTVRVWDVETGKQVKKMAEHSSFVNSCCPARKWPPLVVSGSDDGTAKLWDLRQ 170
Query: 956 KNCTDTIRNVANVCCVQFSPYSSRMLAFGSADYKIYCYDLRNTRIPWCTISGHGKAVSYV 1015
+ T+ + + V FS + ++ G D + +DLR + + GH ++ +
Sbjct: 171 RGAIQTLPDKYQITAVSFSEAADKVFT-GGLDNDVKWWDLRKNEVT-EYLKGHQDMITGM 228
Query: 1016 RF-LDPETLISASTDNTLKIWDLNQTNSSGLSTDACSMTLSGHTN--EKNFV--GLSVHD 1070
+ D L++ + DN LKIWDL + TL+GH + EKN + S +
Sbjct: 229 QLSPDGSYLLTNAMDNELKIWDLRPYAPENRNIK----TLTGHQHNFEKNLLKCSWSPDN 284
Query: 1071 GYITCGSENNEVFSYYKT-----FPMP-----ITSHKFGSIDPITG 1106
+T GS + V+ + T + +P + F +P+ G
Sbjct: 285 RKVTAGSADRMVYIWDTTSRRILYKLPGHNGSVNETAFHPTEPVIG 330
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 38,516,851
Number of extensions: 1665768
Number of successful extensions: 5536
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 5533
Number of HSP's successfully gapped: 11
Length of query: 1144
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1032
Effective length of database: 11,187,833
Effective search space: 11545843656
Effective search space used: 11545843656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 162 (67.0 bits)