Os06g0653800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5 snRNP- specific 40 kDa protein) (38 kDa splicing factor).
FiT-DB / Search/ Help/ Sample detail
|
Os06g0653800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5 snRNP- specific 40 kDa protein) (38 kDa splicing factor).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.02 | 0.205 | 11.1 | 1.36 | 0.361 | -0.479 | -0.138 | 1.36 | 0.258 | 17.4 | 21.4 | 1301 | -- | -- |
| 20.49 | 0.211 | 11.2 | 0.983 | 0.368 | -0.422 | -0.202 | -- | 0.163 | 17.5 | 20.05 | 1190 | -- | -- |
| 19.07 | 0.203 | 11.1 | 1.37 | 0.359 | -0.48 | -- | 1.37 | 0.258 | 17.4 | 21.4 | 1291 | -- | -- |
| 20.55 | 0.211 | 11.2 | 0.966 | 0.364 | -0.406 | -- | -- | 0.146 | 17.6 | 20.31 | 1172 | -- | -- |
| 25.71 | 0.236 | 11.1 | 1.35 | -- | -0.521 | -- | 1.35 | 0.248 | -- | 21.97 | 1276 | -- | -- |
| 25.12 | 0.235 | 11.2 | 0.83 | 0.393 | -- | -0.15 | -- | 0.0577 | 17 | -- | -- | -- | -- |
| 25.18 | 0.235 | 11.2 | 0.83 | 0.392 | -- | -- | -- | 0.057 | 17 | -- | -- | -- | -- |
| 27.16 | 0.243 | 11.2 | 0.958 | -- | -0.413 | -- | -- | 0.143 | -- | 22.57 | 1267 | -- | -- |
| 42.63 | 0.304 | 11.2 | -- | 0.368 | -0.149 | -- | -- | -0.00988 | 17.4 | 22.51 | 1160 | -- | -- |
| 33.26 | 0.269 | 11.2 | 0.816 | -- | -- | -- | -- | 0.0469 | -- | -- | -- | -- | -- |
| 43.33 | 0.308 | 11.2 | -- | 0.377 | -- | -- | -- | -0.0354 | 17 | -- | -- | -- | -- |
| 49.11 | 0.326 | 11.2 | -- | -- | -0.196 | -- | -- | -0.0889 | -- | 34.1 | 2609 | -- | -- |
| 50.8 | 0.333 | 11.2 | -- | -- | -- | -- | -- | -0.0436 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 141 | 18.76 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 211 | 18.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 287 | 18.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 290 | 18.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 456 | 19.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 467 | 19.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 564 | 19.24 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 567 | 19.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 639 | 19.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 756 | 19.34 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 777 | 19.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |