Os02g0771100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to COP1 (Fragment).
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Os02g0771100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to COP1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.89 | 0.3 | 12.3 | -0.821 | 2 | -0.754 | 0.544 | -0.623 | -0.532 | 5.73 | 19.99 | 10 | -- | -- |
| 42.96 | 0.305 | 12.3 | -0.799 | 2 | -0.755 | 0.549 | -- | -0.531 | 5.74 | 19.29 | 9 | -- | -- |
| 41.62 | 0.3 | 12.3 | -0.818 | 2 | -0.756 | -- | -0.622 | -0.534 | 5.72 | 20 | 9 | -- | -- |
| 43.62 | 0.308 | 12.3 | -0.796 | 2 | -0.785 | -- | -- | -0.531 | 5.66 | 19.2 | 8 | -- | -- |
| 239.27 | 0.724 | 12.4 | -0.725 | -- | -0.681 | -- | -0.509 | -0.498 | -- | 8.028 | 7 | -- | -- |
| 52.25 | 0.339 | 12.3 | -0.794 | 2.1 | -- | 0.911 | -- | -0.52 | 7.21 | -- | -- | -- | -- |
| 54.44 | 0.346 | 12.3 | -0.775 | 2.1 | -- | -- | -- | -0.523 | 7.17 | -- | -- | -- | -- |
| 240.93 | 0.726 | 12.4 | -0.717 | -- | -0.679 | -- | -- | -0.497 | -- | 8.028 | 7 | -- | -- |
| 60.34 | 0.362 | 12.3 | -- | 1.98 | -0.788 | -- | -- | -0.441 | 5.65 | 18.91 | 8 | -- | -- |
| 287.51 | 0.792 | 12.4 | -0.737 | -- | -- | -- | -- | -0.486 | -- | -- | -- | -- | -- |
| 70.29 | 0.392 | 12.3 | -- | 2.09 | -- | -- | -- | -0.436 | 7.19 | -- | -- | -- | -- |
| 254.45 | 0.745 | 12.4 | -- | -- | -0.685 | -- | -- | -0.417 | -- | 8.406 | 7 | -- | -- |
| 301.82 | 0.811 | 12.4 | -- | -- | -- | -- | -- | -0.404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.60 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 18 |
| 3 | 40.26 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 6 | 40.33 | radiation | 10.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 31 | 40.97 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 35 | 41.02 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 12 |
| 36 | 41.03 | radiation | 10.0 | 10 | > th | dose independent | sin | 0 | NA |
| 37 | 41.05 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 40 | 41.11 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 18 |
| 41 | 41.12 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 18 | 7 |
| 47 | 41.22 | radiation | 20.0 | 30 | < th | dose independent | rect. | 12 | 7 |
| 54 | 41.25 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 56 | 41.32 | wind | 1.0 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 64 | 41.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 6 |
| 66 | 41.43 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 6 |
| 77 | 41.50 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 18 |
| 82 | 41.56 | wind | 1.0 | 90 | > th | dose dependent | rect. | 13 | 6 |
| 98 | 41.67 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 9 |
| 107 | 41.75 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 115 | 41.86 | radiation | 10.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 117 | 41.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 120 | 41.89 | wind | 3.0 | 90 | > th | dose independent | rect. | 13 | 6 |
| 121 | 41.89 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 10 |
| 132 | 41.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 20 |
| 138 | 41.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 20 |
| 151 | 41.99 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 6 |
| 157 | 42.02 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 215 | 42.16 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 12 |
| 218 | 42.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 231 | 42.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 10 |
| 233 | 42.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 238 | 42.28 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 246 | 42.33 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 13 | 6 |
| 247 | 42.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 249 | 42.34 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 251 | 42.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 254 | 42.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 265 | 42.38 | radiation | 10.0 | 10 | > th | dose independent | no | NA | NA |
| 344 | 42.39 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 345 | 42.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 359 | 42.40 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 2 |
| 363 | 42.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 365 | 42.44 | radiation | 10.0 | 10 | > th | dose independent | rect. | 15 | 23 |
| 373 | 42.48 | radiation | 10.0 | 10 | < th | dose independent | rect. | 10 | 9 |
| 412 | 42.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 417 | 42.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 418 | 42.54 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 423 | 42.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 18 |
| 424 | 42.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 18 |
| 439 | 42.62 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 441 | 42.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 4 |
| 442 | 42.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 4 |
| 457 | 42.67 | radiation | 10.0 | 10 | > th | dose independent | rect. | 9 | 23 |
| 461 | 42.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 14 |
| 463 | 42.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 467 | 42.69 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 15 |
| 486 | 42.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 509 | 42.79 | radiation | 20.0 | 30 | < th | dose independent | rect. | 12 | 20 |
| 510 | 42.79 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 16 | 7 |
| 513 | 42.80 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 517 | 42.81 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 519 | 42.81 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 520 | 42.81 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 533 | 42.83 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 16 | 9 |
| 538 | 42.85 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 7 |
| 574 | 42.87 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 580 | 42.88 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 590 | 42.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 607 | 42.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 608 | 42.91 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 7 |
| 611 | 42.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 17 |
| 612 | 42.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 613 | 42.91 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 17 |
| 616 | 42.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 7 |
| 626 | 42.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 632 | 42.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 640 | 42.94 | radiation | 10.0 | 90 | > th | dose independent | rect. | 9 | 6 |
| 641 | 42.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 10 |
| 642 | 42.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 10 |
| 643 | 42.94 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 646 | 42.94 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 649 | 42.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 667 | 42.97 | humidity | 70.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 668 | 42.97 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 669 | 42.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 675 | 42.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 676 | 42.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 678 | 42.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 679 | 42.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 14 |
| 684 | 42.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 685 | 42.99 | radiation | 40.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 688 | 42.99 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 705 | 43.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 706 | 43.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 14 |
| 711 | 43.02 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 731 | 43.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 15 |
| 732 | 43.05 | humidity | 50.0 | 30 | > th | dose independent | rect. | 1 | 18 |
| 760 | 43.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 769 | 43.12 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 775 | 43.13 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 779 | 43.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 781 | 43.14 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 7 |
| 806 | 43.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 6 |
| 808 | 43.18 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 15 |
| 810 | 43.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 854 | 43.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 864 | 43.24 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 873 | 43.25 | radiation | 1.0 | 90 | < th | dose independent | rect. | 18 | 7 |
| 880 | 43.26 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 23 |
| 883 | 43.27 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 938 | 43.33 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 6 |
| 958 | 43.35 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 6 |
| 962 | 43.35 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 6 |
| 989 | 43.35 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 1000 | 43.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 15 |