Os07g0205200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription initiation factor TFIID subunit 5 (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100).
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Os07g0205200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription initiation factor TFIID subunit 5 (Transcription initiation factor TFIID 100 kDa subunit) (TAF(II)100) (TAFII-100) (TAFII100).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.94 | 0.21 | 8.63 | -0.285 | 0.388 | 0.39 | 0.378 | 0.347 | 0.29 | 4.64 | 70 | 1548 | -- | -- |
| 20.02 | 0.208 | 8.62 | -0.244 | 0.312 | 0.465 | 0.366 | -- | 0.3 | 4.55 | 71 | 1729 | -- | -- |
| 20.1 | 0.209 | 8.63 | -0.304 | 0.332 | 0.431 | -- | 0.497 | 0.286 | 4.52 | 70.28 | 1733 | -- | -- |
| 20.46 | 0.211 | 8.62 | -0.245 | 0.317 | 0.463 | -- | -- | 0.305 | 4.52 | 71 | 1740 | -- | -- |
| 24.59 | 0.231 | 8.62 | -0.258 | -- | 0.613 | -- | 0.235 | 0.326 | -- | 71 | 1838 | -- | -- |
| 25.63 | 0.237 | 8.63 | -0.318 | 0.413 | -- | 0.301 | -- | 0.251 | 4.54 | -- | -- | -- | -- |
| 25.87 | 0.238 | 8.63 | -0.319 | 0.415 | -- | -- | -- | 0.249 | 4.6 | -- | -- | -- | -- |
| 24.68 | 0.231 | 8.62 | -0.23 | -- | 0.621 | -- | -- | 0.32 | -- | 71 | 1839 | -- | -- |
| 21.99 | 0.218 | 8.62 | -- | 0.299 | 0.504 | -- | -- | 0.336 | 4.45 | 70.37 | 1756 | -- | -- |
| 35.05 | 0.277 | 8.64 | -0.304 | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
| 28.57 | 0.25 | 8.63 | -- | 0.409 | -- | -- | -- | 0.285 | 4.62 | -- | -- | -- | -- |
| 23.39 | 0.225 | 8.63 | -- | -- | 0.543 | -- | -- | 0.312 | -- | 70 | 405 | -- | -- |
| 37.48 | 0.286 | 8.63 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.00 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 15 | 20.02 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 16 | 20.02 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 18 | 20.03 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 24 | 20.06 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 31 | 20.09 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 61 | 20.13 | humidity | 70.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 66 | 20.14 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 69 | 20.15 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 70 | 20.15 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 76 | 20.16 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 92 | 20.17 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 107 | 20.18 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 177 | 20.20 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 182 | 20.21 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 244 | 20.29 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 252 | 20.31 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 255 | 20.31 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 287 | 20.34 | humidity | 70.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 399 | 20.41 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 426 | 20.43 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 430 | 20.44 | humidity | 70.0 | 1440 | < th | dose independent | no | NA | NA |
| 521 | 20.46 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 522 | 20.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 541 | 20.48 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 542 | 20.48 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 544 | 20.48 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 564 | 20.50 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 582 | 20.50 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 584 | 20.51 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 598 | 20.52 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 607 | 20.53 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 608 | 20.54 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 609 | 20.54 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 657 | 20.57 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 682 | 20.58 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 706 | 20.59 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 721 | 20.59 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 783 | 20.63 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 21 | 11 |
| 805 | 20.65 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 816 | 20.65 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 21 | 13 |
| 818 | 20.65 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 833 | 20.66 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 834 | 20.66 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 836 | 20.66 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 872 | 20.66 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 874 | 20.67 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 887 | 20.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 894 | 20.68 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 915 | 20.68 | wind | 9.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 916 | 20.68 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 925 | 20.68 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 950 | 20.69 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 971 | 20.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 991 | 20.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |