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Os06g0649500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0122) R2 : 0.173
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.251 (0.0257) R2dN8 : 0.223 R2N8 : 0.173
σ : 0.23
deviance : 24.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.45 0.191 10.9 0.106 0.299 0.464 -0.317 0.0357 0.296 13.3 0.45 110 -- --
16.45 0.189 10.9 0.107 0.3 0.465 -0.354 -- 0.296 13.3 0.44 111 -- --
16.55 0.189 10.9 0.0887 0.294 0.465 -- 0.241 0.298 13.1 0.4568 111 -- --
16.97 0.192 10.9 0.101 0.302 0.465 -- -- 0.295 13.4 0.44 111 -- --
18.13 0.199 11 0.0783 -- 0.223 -- 0.236 0.256 -- 0.1805 119 -- --
19.4 0.206 11 0.0817 0.256 -- 0.385 -- 0.257 0.0571 -- -- -- --
20.03 0.21 11 0.0667 0.255 -- -- -- 0.256 23.9 -- -- -- --
17.91 0.197 11 0.0839 -- 0.248 -- -- 0.271 -- 0.4552 88 -- --
17.22 0.193 10.9 -- 0.31 0.475 -- -- 0.292 13.3 0.45 111 -- --
24.12 0.229 11 0.0745 -- -- -- -- 0.259 -- -- -- -- --
20.15 0.21 11 -- 0.256 -- -- -- 0.248 24 -- -- -- --
18.07 0.198 10.9 -- -- 0.247 -- -- 0.27 -- 0.45 88 -- --
24.27 0.23 11 -- -- -- -- -- 0.251 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.03 radiation 1 90 > th dose independent sin 12 NA
2 16.05 radiation 1 90 < th dose independent sin 12 NA
3 16.08 radiation 20 4320 > th dose dependent rect. 16 16
4 16.11 radiation 1 90 > th dose independent rect. 16 15
7 16.13 humidity 70 270 > th dose independent rect. 15 12
8 16.13 humidity 90 10 < th dose dependent rect. 16 17
9 16.15 radiation 1 90 > th dose independent rect. 16 17
11 16.20 radiation 10 30 < th dose dependent sin 11 NA
12 16.22 radiation 1 90 > th dose dependent rect. 17 14
17 16.30 radiation 1 90 < th dose independent rect. 19 22
22 16.33 radiation 20 4320 > th dose independent rect. 16 17
25 16.35 radiation 1 90 < th dose dependent rect. 19 22
27 16.37 radiation 10 1440 < th dose independent rect. 15 2
29 16.39 radiation 20 4320 > th dose independent rect. 6 3
49 16.41 humidity 70 90 > th dose independent rect. 18 11
50 16.41 radiation 1 90 < th dose dependent rect. 19 20
51 16.42 radiation 10 270 < th dose dependent rect. 11 16
60 16.45 humidity 50 270 > th dose dependent rect. 15 12
64 16.47 humidity 60 270 > th dose independent rect. 7 21
67 16.48 radiation 10 270 < th dose dependent rect. 13 14
71 16.49 radiation 40 1440 < th dose dependent rect. 11 2
76 16.50 humidity 90 10 < th dose dependent sin 12 NA
79 16.51 humidity 50 10 > th dose dependent sin 13 NA
84 16.52 radiation 10 1440 < th dose independent rect. 15 7
92 16.52 radiation 1 1440 > th dose dependent rect. 11 2
108 16.54 radiation 1 90 < th dose dependent rect. 19 15
114 16.55 radiation 1 90 < th dose dependent rect. 19 13
123 16.57 radiation 1 90 < th dose independent rect. 19 12
124 16.57 radiation 1 90 < th dose independent rect. 19 15
134 16.58 humidity 80 270 < th dose dependent rect. 13 10
151 16.59 humidity 80 270 < th dose dependent rect. 13 18
154 16.60 temperature 30 4320 > th dose independent rect. 13 2
164 16.61 radiation 10 270 < th dose independent rect. 15 12
168 16.61 radiation 1 90 < th dose dependent rect. 15 23
173 16.62 radiation 1 90 < th dose dependent no NA NA
177 16.62 humidity 50 270 > th dose dependent rect. 11 16
181 16.62 radiation 1 90 < th dose dependent rect. 9 23
182 16.62 radiation 1 90 < th dose dependent rect. 11 23
185 16.63 temperature 30 4320 < th dose independent rect. 13 2
189 16.63 radiation 1 90 < th dose dependent rect. 11 21
214 16.65 radiation 1 90 < th dose dependent rect. 7 23
216 16.66 temperature 30 270 < th dose independent rect. 17 10
226 16.66 humidity 50 270 > th dose dependent rect. 7 20
233 16.67 radiation 10 1440 < th dose independent rect. 11 7
238 16.67 radiation 1 1440 > th dose dependent rect. 11 5
248 16.68 humidity 80 270 < th dose dependent sin 15 NA
255 16.69 radiation 20 1440 < th dose independent rect. 11 5
265 16.70 radiation 10 1440 < th dose independent rect. 11 12
274 16.70 radiation 40 1440 < th dose dependent rect. 11 5
285 16.71 radiation 10 1440 < th dose independent sin 16 NA
325 16.72 atmosphere 995 43200 < th dose dependent sin 15 NA
346 16.73 radiation 20 4320 < th dose independent rect. 15 18
350 16.73 humidity 80 270 < th dose dependent rect. 15 2
357 16.73 humidity 50 270 > th dose dependent rect. 9 18
359 16.73 atmosphere 995 43200 < th dose dependent rect. 13 19
366 16.74 radiation 20 4320 < th dose independent rect. 8 1
396 16.74 atmosphere 995 43200 < th dose dependent rect. 13 15
397 16.74 radiation 1 90 < th dose dependent rect. 15 17
408 16.75 radiation 20 1440 < th dose independent rect. 8 8
411 16.75 atmosphere 995 43200 > th dose independent rect. 17 19
432 16.75 radiation 40 1440 < th dose dependent rect. 11 12
461 16.75 humidity 50 90 > th dose dependent rect. 9 20
466 16.76 atmosphere 995 43200 < th dose independent rect. 17 18
467 16.76 radiation 1 90 > th dose independent rect. 15 23
470 16.76 temperature 25 1440 > th dose dependent rect. 7 3
502 16.77 radiation 20 1440 < th dose independent rect. 11 2
517 16.77 temperature 25 4320 > th dose dependent rect. 18 1
560 16.78 radiation 20 1440 < th dose independent rect. 8 21
615 16.79 radiation 1 90 < th dose independent rect. 11 20
619 16.79 radiation 1 90 < th dose independent rect. 15 23
637 16.79 atmosphere 995 43200 < th dose dependent rect. 15 18
642 16.80 radiation 1 90 < th dose independent no NA NA
651 16.80 radiation 1 90 < th dose independent rect. 11 23
676 16.81 radiation 1 90 > th dose independent no NA NA
677 16.81 radiation 20 1440 < th dose independent sin 21 NA
683 16.81 radiation 1 90 > th dose independent rect. 4 15
738 16.81 radiation 30 1440 < th dose independent rect. 10 23
787 16.82 radiation 1 1440 > th dose dependent sin 18 NA
819 16.82 radiation 20 1440 > th dose dependent rect. 11 22
821 16.83 radiation 20 4320 > th dose independent sin 12 NA
839 16.83 radiation 40 1440 > th dose independent rect. 14 19
890 16.84 radiation 20 1440 < th dose independent rect. 21 19
904 16.84 radiation 40 1440 < th dose dependent sin 19 NA
998 16.85 radiation 20 4320 > th dose dependent rect. 7 1