BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0786500 Os01g0786500|J065140E08
(216 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0786500 Plastocyanin-like domain containing protein 200 6e-52
Os08g0138200 Cupredoxin domain containing protein 84 8e-17
Os06g0218600 Cupredoxin domain containing protein 81 7e-16
Os08g0137800 Cupredoxin domain containing protein 80 2e-15
Os07g0105000 Cupredoxin domain containing protein 79 2e-15
Os08g0138100 79 3e-15
Os08g0138400 Plastocyanin-like domain containing protein 77 9e-15
Os02g0653200 Plastocyanin-like domain containing protein 76 2e-14
Os09g0469300 Cupredoxin domain containing protein 76 2e-14
Os08g0137400 Cupredoxin domain containing protein 74 7e-14
Os04g0545600 Similar to Uclacyanin 3-like protein 73 2e-13
Os03g0807500 Cupredoxin domain containing protein 71 6e-13
Os07g0542900 Cupredoxin domain containing protein 70 8e-13
Os04g0545400 Plastocyanin-like domain containing protein 70 2e-12
Os02g0758800 Cupredoxin domain containing protein 69 3e-12
Os04g0629200 Cupredoxin domain containing protein 67 9e-12
Os08g0137900 Similar to Chemocyanin precursor (Basic blue p... 67 1e-11
AY569612 66 2e-11
Os09g0572700 Cupredoxin domain containing protein 66 2e-11
>Os01g0786500 Plastocyanin-like domain containing protein
Length = 216
Score = 200 bits (509), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 123/201 (61%), Positives = 123/201 (61%)
Query: 1 DCCRLIYVPRSPAHSLRAKHCAAFKYSSYHNVVEVTKDDYEACSATSPVSADSSGSTTIV 60
DCCRLIYVPRSPAHSLRAKHCAAFKYSSYHNVVEVTKDDYEACSATSPVSADSSGSTTIV
Sbjct: 1 DCCRLIYVPRSPAHSLRAKHCAAFKYSSYHNVVEVTKDDYEACSATSPVSADSSGSTTIV 60
Query: 61 LTTPGKRYFICGAPGHCQSGMKLVVDVADRXXXXXXXXXXXXXXXXRHKRRTXXXXXXXX 120
LTTPGKRYFICGAPGHCQSGMKLVVDVADR RHKRRT
Sbjct: 61 LTTPGKRYFICGAPGHCQSGMKLVVDVADRPAPATPSPPPLLPPSPRHKRRTAPAPMPLP 120
Query: 121 XXXXXXXXXXXXXXXTQXXXXXXXXXXXXXLPPKPAPAMAPTVQSVEXXXXXXXXXXXXX 180
TQ LPPKPAPAMAPTVQSVE
Sbjct: 121 PAQAPVWSPAPAPAATQRRHSGHKKHRSRHLPPKPAPAMAPTVQSVEADFPAAAFAPMSS 180
Query: 181 XXXXXXXXXXXXXVVRQKWSD 201
VVRQKWSD
Sbjct: 181 PPPPPPMSSDASAVVRQKWSD 201
>Os08g0138200 Cupredoxin domain containing protein
Length = 190
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 4 RLIYVPRSPAHSLRAKHCAAFKYS-SYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLT 62
R Y + A + RA F+YS + H+VVEVTK Y+ACSA SP++ +SG T+ L
Sbjct: 42 RTNYAQWASAATFRAGDRLVFRYSPAAHDVVEVTKAGYDACSAASPIATFNSGDDTVPLA 101
Query: 63 TPGKRYFICGAPGHCQSGMKLVVDV 87
G RYFICG PGHC +GMKL V V
Sbjct: 102 AVGTRYFICGFPGHCAAGMKLAVKV 126
>Os06g0218600 Cupredoxin domain containing protein
Length = 198
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 24 FKYSS-YHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQSGMK 82
F Y+ H+V EV+ DY AC+A++ + +DSSG+TT+ L T GK YFICG GHC +GMK
Sbjct: 56 FNYAGGAHSVDEVSAADYAACTASNALQSDSSGTTTVTLKTAGKHYFICGIAGHCSNGMK 115
Query: 83 LVVDV 87
LVVDV
Sbjct: 116 LVVDV 120
>Os08g0137800 Cupredoxin domain containing protein
Length = 190
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 15 SLRAKHCAAFKYS-SYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGA 73
+ RA FKYS + H+VVEV K DY++CS++SP++ +SG TI LT G RYFICG
Sbjct: 50 NFRAGDQIVFKYSPAAHDVVEVNKADYDSCSSSSPIATFNSGDDTIPLTATGTRYFICGF 109
Query: 74 PGHCQSGMKLVVDV 87
GHC GMK+ V V
Sbjct: 110 NGHCTGGMKVAVKV 123
>Os07g0105000 Cupredoxin domain containing protein
Length = 195
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 24 FKYSSYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQSGMKL 83
F Y S H+VVEV K Y+ACS + +++ + GSTT+ L PGK YFICG PGHC +GMKL
Sbjct: 59 FTYPSSHDVVEVPKASYDACSPANALASYTGGSTTVKLDAPGKHYFICGVPGHCAAGMKL 118
Query: 84 VVDVA 88
V VA
Sbjct: 119 EVTVA 123
>Os08g0138100
Length = 195
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 4 RLIYVPRSPAHSLRAKHCAAFKYS-SYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLT 62
R Y A + R FKYS + H+VVEVTK Y++CS++ PV+ +SG T+ LT
Sbjct: 41 RTNYAQWVSAVTFRVGDQLVFKYSPAAHDVVEVTKAGYDSCSSSGPVATFNSGDDTVPLT 100
Query: 63 TPGKRYFICGAPGHCQSGMKLVVDV 87
G RYF+CG PGHC +GMK+ V V
Sbjct: 101 ATGTRYFMCGFPGHCAAGMKIAVKV 125
>Os08g0138400 Plastocyanin-like domain containing protein
Length = 190
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 7 YVPRSPAHSLRAKHCAAFKYSSY-HNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPG 65
Y + + + R FKYS+ H+VVEVTKD Y +CSA+SP++ +G + L G
Sbjct: 37 YTSWASSITFRLDDKLVFKYSAAAHDVVEVTKDGYLSCSASSPIAVHRTGEDAVELGRLG 96
Query: 66 KRYFICGAPGHCQSGMKLVV 85
+RYFICG PGHC +GMKL V
Sbjct: 97 RRYFICGVPGHCDAGMKLEV 116
>Os02g0653200 Plastocyanin-like domain containing protein
Length = 202
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 42/64 (65%)
Query: 24 FKYSSYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQSGMKL 83
F+YS H V EV+ DY ACSA++ + + S +T I LT PG RYFICG GHC GMKL
Sbjct: 59 FQYSMMHTVAEVSSADYSACSASNSIQSYSDQNTKIALTKPGTRYFICGTSGHCSGGMKL 118
Query: 84 VVDV 87
V V
Sbjct: 119 AVTV 122
>Os09g0469300 Cupredoxin domain containing protein
Length = 152
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 16 LRAKHCAAFKYSS-YHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAP 74
R F Y + H V EV++ ++++C+ SP+S D+ GSTTI L+ PG YFIC P
Sbjct: 48 FRQGDELVFNYQARAHTVTEVSQTNFDSCNGNSPLSNDNGGSTTIRLSYPGMHYFICTIP 107
Query: 75 GHCQSGMKLVVDV 87
GHC SGMKL V+V
Sbjct: 108 GHCSSGMKLAVNV 120
>Os08g0137400 Cupredoxin domain containing protein
Length = 174
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 24 FKYS-SYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQSGMK 82
F YS H+VVEVTK Y+ACS + +SA SG+ + LT G RYF+CG GHC SGMK
Sbjct: 68 FTYSRELHDVVEVTKAGYDACSNANNISAFRSGNDLVALTAVGTRYFLCGLTGHCGSGMK 127
Query: 83 LVVDV 87
+ +DV
Sbjct: 128 IRIDV 132
>Os04g0545600 Similar to Uclacyanin 3-like protein
Length = 191
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 24 FKYSSY-HNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQSGMK 82
F+Y+S H+VVEV++ D+ +CSA +P+ + G+T + LT G RYFICG+ GHC +GMK
Sbjct: 67 FQYTSAGHSVVEVSEADHTSCSAANPLRSYKDGTTIVTLTRSGTRYFICGSTGHCGAGMK 126
Query: 83 LVVDVA 88
L V VA
Sbjct: 127 LTVTVA 132
>Os03g0807500 Cupredoxin domain containing protein
Length = 209
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 24 FKY-SSYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQSGMK 82
FKY HNVVEV K DY++C+ +SP++ +SG I + G R+FICG PGHC +G K
Sbjct: 59 FKYPQGIHNVVEVKKADYDSCTNSSPIATHTSGDDKIAIKAAGHRFFICGVPGHCAAGQK 118
Query: 83 LVVDV 87
+ + V
Sbjct: 119 VNIRV 123
>Os07g0542900 Cupredoxin domain containing protein
Length = 192
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 22 AAFKYSSYHNVVEV-TKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQSG 80
AAFKY YHNVVEV + DY+ C +T+PVS S G+TT L G RYFIC P HC +G
Sbjct: 50 AAFKYEPYHNVVEVPAETDYDGCVSTNPVSVHSGGNTTFELAAAGTRYFICSIPRHCLNG 109
Query: 81 MKLV 84
V
Sbjct: 110 TMHV 113
>Os04g0545400 Plastocyanin-like domain containing protein
Length = 185
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 24 FKYSSYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQSGMKL 83
F+YS YH + EV + Y CS S V + S G+TT+ LT PG RYF+CG HC GM+L
Sbjct: 59 FQYSKYHTLSEVDEAGYRNCSTASAVLSSSDGNTTVALTAPGDRYFVCGNELHCLGGMRL 118
Query: 84 VVDVAD 89
V V++
Sbjct: 119 HVPVSE 124
>Os02g0758800 Cupredoxin domain containing protein
Length = 246
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 7 YVPRSPAHSLRAKHCAAFKYSS-YHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPG 65
Y + + S + FKY+S H VVEV+ Y AC+A + + +DSSGSTT+ L TPG
Sbjct: 42 YTSWAGSKSFKVGDSLVFKYASGAHTVVEVSAAGYLACAAANALGSDSSGSTTVALKTPG 101
Query: 66 KRYFICGAPGHCQSGMKLVVDV 87
K YFIC GHC GMK+ VDV
Sbjct: 102 KHYFICTIAGHCAGGMKMEVDV 123
>Os04g0629200 Cupredoxin domain containing protein
Length = 165
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 7 YVPRSPAHSLRAKHCAAFKYSSYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGK 66
Y S +++ F Y + H V E++ DY ACS +P+S+D+ GSTT+V PG
Sbjct: 40 YGDWSSKNTVAVGDSVVFTYGTPHTVDELSAADYTACSFAAPLSSDAGGSTTVVFDKPGT 99
Query: 67 RYFICGAPGHCQSGMKLVVDVAD 89
RYF C + HC G K+ + V++
Sbjct: 100 RYFACSSGSHCSMGQKVAITVSN 122
>Os08g0137900 Similar to Chemocyanin precursor (Basic blue protein)
(Plantacyanin)
Length = 188
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 13 AHSLRAKHCAAFKYS-SYHNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFIC 71
A + R FKYS + H+VVEV K DY++CS++SP+S +SG TI L G RYFIC
Sbjct: 46 AITFRVGDQLVFKYSPAAHDVVEVNKADYDSCSSSSPISTFNSGDDTIPLAAIGTRYFIC 105
Query: 72 GAPGHCQSGMKLVVDV 87
G PGHC +GMK+ V V
Sbjct: 106 GFPGHCTAGMKVAVKV 121
>AY569612
Length = 211
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 24 FKYSSY-HNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQS--- 79
FKYS+ H+VVEV K Y++CS ++ ++ ++G+ I LT+ G RYFICG PGHC +
Sbjct: 59 FKYSAQRHDVVEVNKAGYDSCSTSTSIATHTTGNDVIPLTSTGTRYFICGFPGHCTTTGT 118
Query: 80 -GMKLVVDV 87
MK+ +DV
Sbjct: 119 GNMKIQIDV 127
>Os09g0572700 Cupredoxin domain containing protein
Length = 172
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 24 FKYSSY-HNVVEVTKDDYEACSATSPVSADSSGSTTIVLTTPGKRYFICGAPGHCQS--- 79
FKYS+ H+VVEV K Y++CS ++ ++ ++G+ I LT+ G RYFICG PGHC +
Sbjct: 59 FKYSAQRHDVVEVNKAGYDSCSTSTSIATHTTGNDVIPLTSTGTRYFICGFPGHCTTTGT 118
Query: 80 -GMKLVVDV 87
MK+ +DV
Sbjct: 119 GNMKIQIDV 127
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.129 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,606,872
Number of extensions: 139584
Number of successful extensions: 542
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 19
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)