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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0137900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chemocyanin precursor (Basic blue protein) (Plantacyanin).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0355) R2 : 0.259
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.62 (0.209) R2dE : 0.258 R2E : 0.259
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0329 (0.075) R2dN8 : 0.000387 R2N8 : 0.00136
σ : 0.667
deviance : 205.07
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 5.09
memory length : 1319
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.8
open length of G : 0.317

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.52 0.657 4.09 2.49 0.264 39.9 -0.189 114 -0.0577 4.77 0.4579 1326 11 0.983
254.6 0.749 3.2 -0.629 0.3 2.33 -0.523 -- -0.17 4.01 4.057 224 12 0.4
195.59 0.651 4.08 2.48 0.264 39.9 -- 114 -0.057 4.89 0.4922 1321 11 0.987
236.84 0.717 3.2 -0.629 0.3 2.33 -- -- -0.17 4.01 4.057 889 12 0.4
199.27 0.657 4.09 2.49 -- 39.9 -- 114 -0.0507 -- 0.4994 1322 11 0.984
259.94 0.756 3.21 -0.658 0.294 -- -0.45 -- -0.18 4.29 -- -- -- --
260.47 0.756 3.2 -0.653 0.293 -- -- -- -0.177 4.57 -- -- -- --
206.51 0.669 3.18 -0.27 -- 2.32 -- -- -0.0503 -- 2.236 2206 11.9 0.0952
201.25 0.661 3.19 -- 0.265 2.6 -- -- -0.0362 4.22 5.166 1317 11.8 0.286
265.06 0.761 3.21 -0.642 -- -- -- -- -0.169 -- -- -- -- --
271.73 0.771 3.19 -- 0.281 -- -- -- -0.104 4.63 -- -- -- --
205.07 0.667 3.19 -- -- 2.62 -- -- -0.0329 -- 5.09 1319 11.8 0.317
275.93 0.775 3.19 -- -- -- -- -- -0.0982 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.00 radiation 1 1440 < th dose independent rect. 11 1
2 201.00 radiation 1 1440 < th dose dependent rect. 11 1
3 201.14 radiation 1 1440 > th dose independent rect. 11 1
4 201.88 radiation 1 1440 < th dose independent rect. 9 3
5 201.88 radiation 1 1440 < th dose dependent rect. 9 3
10 205.39 radiation 1 1440 > th dose independent rect. 9 3
11 205.67 wind 7 4320 > th dose independent rect. 17 1
24 206.91 wind 7 4320 < th dose independent rect. 17 1
32 207.63 radiation 1 1440 < th dose independent rect. 13 1
33 207.63 radiation 1 1440 < th dose dependent rect. 13 1
40 208.14 radiation 1 1440 > th dose independent rect. 13 1
64 209.57 wind 7 4320 > th dose dependent rect. 17 2
74 210.75 radiation 20 1440 < th dose dependent rect. 11 1
116 213.93 radiation 20 1440 < th dose dependent rect. 11 6
118 214.28 radiation 10 1440 < th dose dependent rect. 9 13
152 215.15 radiation 20 1440 < th dose dependent rect. 11 11
176 215.81 radiation 10 1440 < th dose dependent sin 20 NA
203 216.58 humidity 60 14400 < th dose independent rect. 6 1
205 216.58 humidity 60 14400 < th dose independent rect. 20 1
207 216.58 radiation 20 14400 > th dose independent rect. 17 1
258 216.58 humidity 60 14400 < th dose dependent rect. 6 1
260 216.58 humidity 60 14400 < th dose dependent rect. 20 1
262 216.58 radiation 20 14400 > th dose dependent rect. 17 1
315 216.67 radiation 10 1440 > th dose independent rect. 8 9
333 217.20 radiation 10 1440 > th dose independent rect. 11 23
360 217.57 radiation 10 1440 > th dose independent sin 1 NA
361 217.57 radiation 10 1440 > th dose independent rect. 16 22
407 217.93 radiation 10 1440 > th dose independent rect. 5 9
559 218.69 radiation 10 1440 > th dose independent no NA NA
643 218.78 wind 5 1440 > th dose dependent rect. 14 1
786 220.56 wind 5 1440 > th dose dependent rect. 13 5
810 220.77 humidity 60 14400 > th dose independent rect. 23 9
835 220.92 radiation 20 1440 < th dose independent rect. 11 1
965 221.94 humidity 90 720 > th dose dependent rect. 20 1