Os01g0786500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plastocyanin-like domain containing protein.
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Os01g0786500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plastocyanin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.52 | 0.414 | 2.98 | 0.851 | 0.118 | -1.18 | 0.425 | 11.8 | -0.0276 | 7.45 | 29.35 | 327 | -- | -- |
| 79.02 | 0.417 | 3.07 | 0.0877 | 0.117 | 0.591 | 0.26 | -- | -0.0584 | 7.31 | 33.3 | 29 | -- | -- |
| 77.98 | 0.411 | 2.99 | 0.82 | 0.114 | -1.17 | -- | 11.4 | -0.035 | 7.52 | 29.42 | 319 | -- | -- |
| 77.56 | 0.41 | 3.09 | 0.00918 | 0.0932 | 1.31 | -- | -- | -0.0904 | 6.21 | 34.7 | 7 | -- | -- |
| 78.56 | 0.413 | 2.99 | 0.822 | -- | -1.19 | -- | 11 | -0.0309 | -- | 29.31 | 327 | -- | -- |
| 80.01 | 0.419 | 3.07 | 0.0972 | 0.108 | -- | 0.253 | -- | -0.0641 | 7.97 | -- | -- | -- | -- |
| 80.19 | 0.419 | 3.07 | 0.104 | 0.11 | -- | -- | -- | -0.0646 | 7.56 | -- | -- | -- | -- |
| 77.71 | 0.412 | 3.07 | 0.0959 | -- | 1.77 | -- | -- | -0.059 | -- | 34.58 | 431 | -- | -- |
| 77.25 | 0.412 | 3.07 | -- | 0.116 | 1.8 | -- | -- | -0.0714 | 7.02 | 34.62 | 4 | -- | -- |
| 80.84 | 0.42 | 3.07 | 0.105 | -- | -- | -- | -- | -0.063 | -- | -- | -- | -- | -- |
| 80.48 | 0.42 | 3.07 | -- | 0.111 | -- | -- | -- | -0.0762 | 7.5 | -- | -- | -- | -- |
| 77.95 | 0.413 | 3.08 | -- | -- | 1.79 | -- | -- | -0.0696 | -- | 34.58 | 431 | -- | -- |
| 81.13 | 0.42 | 3.08 | -- | -- | -- | -- | -- | -0.0746 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.38 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 2 | 65.51 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 4 | 66.70 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 5 | 66.70 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 6 | 68.35 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 8 | 68.42 | wind | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 11 | 71.21 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 12 | 71.23 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 13 | 71.26 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 14 | 71.28 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 16 | 71.30 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 22 | 71.36 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 23 | 71.36 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 26 | 71.37 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 28 | 71.38 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 5 | 9 |
| 33 | 71.42 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 35 | 71.42 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 36 | 71.42 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 41 | 71.42 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 43 | 71.42 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 48 | 71.42 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 49 | 71.42 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 50 | 71.42 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 53 | 71.42 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 58 | 71.42 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 69 | 71.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 74 | 71.65 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 76 | 71.76 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 90 | 71.84 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 91 | 71.84 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 92 | 71.84 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 95 | 71.84 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 99 | 71.84 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 108 | 71.84 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 109 | 71.84 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 129 | 71.84 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 199 | 72.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 200 | 72.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 214 | 73.34 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 215 | 73.39 | radiation | 40.0 | 90 | > th | dose independent | rect. | 15 | 1 |
| 232 | 73.39 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 249 | 73.40 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 250 | 73.43 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 332 | 73.63 | radiation | 20.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 438 | 73.87 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 9 |
| 480 | 73.99 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 481 | 74.05 | humidity | 60.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 486 | 74.14 | humidity | 60.0 | 30 | < th | dose dependent | rect. | 13 | 3 |
| 530 | 74.30 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 2 |
| 531 | 74.30 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 2 |
| 534 | 74.34 | wind | 1.0 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 543 | 74.40 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 2 |
| 545 | 74.40 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 606 | 74.63 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 696 | 75.10 | wind | 1.0 | 90 | < th | dose independent | rect. | 15 | 1 |
| 707 | 75.16 | wind | 3.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 781 | 75.27 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 22 |
| 788 | 75.32 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 14 | 12 |
| 804 | 75.39 | humidity | 60.0 | 10 | > th | dose independent | rect. | 14 | 12 |
| 806 | 75.40 | wind | 3.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 808 | 75.40 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 20 | 5 |
| 812 | 75.40 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 831 | 75.48 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 854 | 75.57 | radiation | 20.0 | 10 | < th | dose independent | rect. | 14 | 12 |
| 892 | 75.66 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 14 |
| 934 | 75.76 | humidity | 60.0 | 10 | < th | dose independent | sin | 12 | NA |
| 971 | 75.83 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 11 | 7 |
| 984 | 75.86 | wind | 9.0 | 30 | < th | dose dependent | rect. | 15 | 13 |