FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0545600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Uclacyanin 3-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.49 (0.246) R2 : 0.258
β1 : 5.32 (0.581) R2dD : 5.74 R2D : -29.3
β2 : -- (--) R2dC : -- R2C : --
β3 : 182 (17.6) R2dE : 871 R2E : -883
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 378 (36.6) R2dD*E : 846 R2D*E : -831
γ1 : 0.0831 (0.0553) R2dN8 : 0.00545 R2N8 : -22.5
σ : 0.466
deviance : 100.14
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 15.06
memory length : 3956
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.7 0.469 5.5 5.33 0.0594 182 -0.301 378 0.0853 15.3 15.06 3994 -- --
122.69 0.52 2.96 -0.677 0.0459 -0.446 -0.161 -- -0.0582 16.6 15.06 3994 -- --
99.95 0.466 5.49 5.32 0.0621 182 -- 378 0.0867 16 15.06 3956 -- --
121.84 0.514 2.96 -0.717 0.0479 -0.514 -- -- -0.0684 16.3 11.6 6154 -- --
100.14 0.466 5.49 5.32 -- 182 -- 378 0.0831 -- 15.06 3956 -- --
123.06 0.52 2.96 -0.658 0.049 -- -0.189 -- -0.0535 15.9 -- -- -- --
123.17 0.52 2.96 -0.661 0.0481 -- -- -- -0.0546 16 -- -- -- --
121.97 0.514 2.96 -0.72 -- -0.504 -- -- -0.0724 -- 11.5 6161 -- --
134.6 0.54 2.94 -- 0.0624 -0.151 -- -- 0.0179 16 13.6 5701 -- --
123.29 0.519 2.96 -0.663 -- -- -- -- -0.0559 -- -- -- -- --
134.68 0.543 2.94 -- 0.0609 -- -- -- 0.019 15.8 -- -- -- --
110.18 0.489 2.9 -- -- 1.19 -- -- 0.17 -- 20.73 3882 -- --
134.88 0.542 2.94 -- -- -- -- -- 0.0177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.30 temperature 20.0 4320 < th dose dependent rect. 15 1
7 94.66 temperature 15.0 4320 < th dose independent rect. 14 1
14 95.03 humidity 90.0 4320 > th dose dependent rect. 16 1
17 95.46 humidity 90.0 4320 > th dose independent rect. 15 2
22 95.84 temperature 20.0 4320 > th dose independent rect. 14 2
37 96.77 humidity 90.0 4320 < th dose independent rect. 16 1
46 97.51 temperature 15.0 4320 > th dose independent rect. 14 5
49 97.64 temperature 15.0 4320 < th dose independent rect. 4 1
50 97.69 temperature 20.0 4320 > th dose independent rect. 11 1
52 97.73 temperature 20.0 4320 < th dose independent rect. 11 1
55 97.85 temperature 15.0 4320 > th dose independent rect. 3 21
58 97.94 temperature 15.0 4320 > th dose independent rect. 3 19
70 98.31 temperature 15.0 4320 < th dose independent rect. 17 1
79 98.49 temperature 15.0 4320 > th dose independent rect. 14 10
80 98.50 temperature 15.0 4320 < th dose independent rect. 3 21
123 99.04 temperature 15.0 4320 < th dose independent rect. 3 18
129 99.10 temperature 20.0 4320 > th dose independent rect. 11 7
145 99.24 temperature 20.0 4320 < th dose independent rect. 10 7
154 99.31 temperature 15.0 4320 > th dose independent rect. 3 2
157 99.33 temperature 15.0 4320 < th dose independent rect. 14 10
164 99.40 temperature 15.0 4320 > th dose independent sin 19 NA
165 99.40 temperature 15.0 4320 > th dose independent rect. 3 7
187 99.52 temperature 15.0 4320 > th dose independent rect. 16 8
199 99.59 temperature 15.0 4320 < th dose independent sin 19 NA
206 99.63 temperature 15.0 4320 > th dose independent rect. 3 5
217 99.66 temperature 15.0 4320 > th dose independent rect. 9 15
252 99.82 temperature 15.0 4320 > th dose independent rect. 16 5
264 99.88 temperature 15.0 4320 < th dose independent rect. 17 7
275 99.95 temperature 15.0 4320 < th dose independent rect. 9 16
285 99.97 temperature 15.0 4320 > th dose independent rect. 3 12
338 100.15 temperature 15.0 4320 > th dose independent sin 1 NA
346 100.17 temperature 15.0 4320 < th dose independent rect. 13 21
357 100.21 temperature 15.0 4320 > th dose independent rect. 13 21
361 100.22 temperature 15.0 4320 > th dose independent rect. 13 23
364 100.23 temperature 15.0 4320 < th dose dependent rect. 14 10
383 100.27 temperature 15.0 4320 < th dose independent rect. 12 19
387 100.27 temperature 15.0 4320 < th dose independent rect. 17 22
389 100.28 temperature 15.0 4320 < th dose independent no NA NA
397 100.28 temperature 15.0 4320 < th dose independent rect. 9 22
403 100.29 radiation 40.0 4320 > th dose independent rect. 7 1
427 100.29 radiation 40.0 4320 > th dose dependent rect. 7 1
450 100.31 temperature 20.0 720 < th dose independent rect. 9 8
464 100.33 temperature 15.0 4320 < th dose dependent rect. 9 15
480 100.37 temperature 15.0 4320 < th dose dependent rect. 17 7
482 100.38 humidity 60.0 43200 < th dose independent rect. 23 2
492 100.39 temperature 15.0 4320 < th dose independent rect. 23 23
499 100.41 temperature 15.0 4320 < th dose independent rect. 21 23
501 100.41 temperature 15.0 4320 < th dose dependent sin 20 NA
507 100.42 temperature 15.0 4320 > th dose independent rect. 11 23
513 100.45 precipitation 0.1 4320 > th dose independent rect. 15 1
516 100.45 precipitation 0.1 4320 > th dose dependent rect. 15 1
517 100.46 temperature 15.0 4320 > th dose independent no NA NA
521 100.46 humidity 60.0 43200 < th dose dependent rect. 23 2
525 100.47 temperature 15.0 4320 > th dose independent rect. 16 23
527 100.48 temperature 15.0 4320 > th dose independent rect. 9 23
528 100.49 precipitation 0.1 4320 < th dose independent rect. 15 1
531 100.49 precipitation 0.1 4320 < th dose dependent rect. 15 1
536 100.50 temperature 15.0 4320 > th dose independent rect. 23 23
549 100.54 temperature 15.0 4320 > th dose independent rect. 7 23
563 100.57 temperature 15.0 4320 < th dose independent rect. 17 17
569 100.57 temperature 15.0 4320 < th dose independent rect. 19 23
629 100.66 temperature 15.0 4320 < th dose dependent rect. 19 1
632 100.66 temperature 15.0 4320 < th dose dependent rect. 9 11
666 100.71 temperature 15.0 4320 < th dose independent rect. 17 14
694 100.77 temperature 15.0 4320 < th dose independent rect. 23 1
722 100.83 temperature 15.0 4320 < th dose independent rect. 3 7
734 100.86 temperature 15.0 4320 < th dose independent sin 1 NA
826 101.07 temperature 15.0 4320 < th dose independent rect. 21 3
831 101.09 temperature 15.0 4320 < th dose dependent rect. 23 1
883 101.24 temperature 15.0 4320 < th dose independent rect. 3 12
959 101.44 humidity 60.0 43200 < th dose independent rect. 23 8
989 101.50 wind 3.0 4320 < th dose dependent rect. 4 4