Os08g0137400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os08g0137400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 405.75 | 0.946 | 6.79 | -6.13 | 0.937 | 3.33 | -2.05 | 1.02 | 0.113 | 18.3 | 15.59 | 370 | 11.6 | 19.4 |
| 406.77 | 0.939 | 6.79 | -6.19 | 0.913 | 3.45 | -2.1 | -- | 0.102 | 18.1 | 15.45 | 378 | 11.5 | 19.5 |
| 413.92 | 0.948 | 6.81 | -6.32 | 0.921 | 3.33 | -- | -0.0951 | 0.0805 | 18.8 | 16 | 387 | 11.4 | 19.7 |
| 413.9 | 0.948 | 6.81 | -6.29 | 0.909 | 3.34 | -- | -- | 0.0642 | 18.8 | 16.03 | 387 | 11.3 | 19.7 |
| 441.51 | 0.979 | 6.82 | -6.28 | -- | 3.94 | -- | 0.316 | -0.0173 | -- | 16.81 | 353 | 11.1 | 19.7 |
| 570.38 | 1.12 | 6.74 | -5.69 | 2.09 | -- | -0.339 | -- | 0.531 | 20.3 | -- | -- | -- | -- |
| 570.73 | 1.12 | 6.74 | -5.68 | 2.09 | -- | -- | -- | 0.531 | 20.3 | -- | -- | -- | -- |
| 440.12 | 0.977 | 6.81 | -6.43 | -- | 3.97 | -- | -- | -0.0516 | -- | 16.41 | 353 | 11 | 19.9 |
| 1376.36 | 1.73 | 6.67 | -- | 1.59 | 1.67 | -- | -- | 0.853 | 20.1 | 20.6 | 85 | 13.8 | 19 |
| 812.39 | 1.33 | 6.69 | -5.7 | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
| 1421.6 | 1.76 | 6.6 | -- | 2.12 | -- | -- | -- | 1.16 | 20.1 | -- | -- | -- | -- |
| 1463.6 | 1.78 | 6.64 | -- | -- | 2.65 | -- | -- | 0.835 | -- | 12.23 | 184 | 12.5 | 18.5 |
| 1668.25 | 1.91 | 6.54 | -- | -- | -- | -- | -- | 1.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 415.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 3 | 417.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 82 | 432.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 133 | 436.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 13 |
| 173 | 437.86 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 175 | 437.89 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 179 | 438.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 219 | 439.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 248 | 439.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 264 | 440.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 267 | 440.46 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 303 | 440.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 305 | 440.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 306 | 440.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 312 | 441.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 366 | 441.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 887 | 446.77 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 6 |
| 933 | 447.26 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 949 | 447.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 963 | 447.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 20 |