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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0758800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.34 (0.0453) R2 : 0.678
β1 : -4.97 (0.2) R2dD : 0.801 R2D : 0.202
β2 : 1.72 (0.101) R2dC : 0.211 R2C : 0.14
β3 : 5 (0.42) R2dE : 0.307 R2E : -0.165
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 20.2 (1.39) R2dD*E : 0.663 R2D*E : -0.881
γ1 : -0.412 (0.0926) R2dN8 : 0.0204 R2N8 : -0.0439
σ : 0.769
deviance : 272.32
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_____
C
peak time of C : 9.78
E
wheather : radiation
threshold : 0.4796
memory length : 1450
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 21.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
270.95 0.773 5.35 -4.94 1.57 4.87 -1.17 19.7 -0.408 9.49 0.5387 1438 18 21.9
397.22 0.935 5.08 -3.21 1.88 0.265 -1.03 -- -0.181 10.1 2.286 1769 18.5 20.6
272.32 0.769 5.34 -4.97 1.72 5 -- 20.2 -0.412 9.78 0.4796 1450 18 21.8
367.55 0.893 5.03 -3.18 1.61 0.864 -- -- 0.0459 10.3 6.349 11725 18.6 20.4
385.96 0.915 5.4 -5.02 -- 5.21 -- 20.2 -0.419 -- 0.4833 1406 18 21.8
398.82 0.936 5.09 -3.22 1.62 -- -1.1 -- -0.18 9.72 -- -- -- --
403.35 0.94 5.09 -3.26 1.62 -- -- -- -0.182 9.77 -- -- -- --
421.3 0.956 5.01 -1.89 -- 3.24 -- -- 0.119 -- 2.481 2639 17.2 20.7
350.39 0.872 4.85 -- 1.59 2.75 -- -- 0.823 9.65 0.005515 47520 1.48 16.4
560.32 1.11 5.14 -3.28 -- -- -- -- -0.18 -- -- -- -- --
683.94 1.22 5.01 -- 1.63 -- -- -- 0.182 9.92 -- -- -- --
499.71 1.04 4.85 -- -- 2.87 -- -- 0.949 -- 0.00166 47520 0.136 17.6
843.89 1.36 5.05 -- -- -- -- -- 0.183 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 275.29 humidity 90 14400 > th dose dependent rect. 5 10
15 279.62 radiation 1 1440 < th dose dependent rect. 18 22
19 280.55 humidity 90 14400 > th dose dependent sin 2 NA
24 281.40 radiation 1 4320 > th dose independent rect. 18 21
25 281.53 radiation 1 4320 < th dose independent rect. 18 21
46 284.19 humidity 90 14400 > th dose dependent rect. 21 19
47 284.21 radiation 1 4320 > th dose independent rect. 18 16
50 284.29 radiation 1 4320 < th dose independent rect. 18 16
113 286.18 humidity 90 14400 > th dose dependent rect. 9 22
120 286.36 radiation 1 4320 < th dose independent rect. 20 19
122 286.38 radiation 1 4320 < th dose independent rect. 5 10
132 286.50 radiation 1 4320 > th dose independent rect. 5 10
150 286.53 radiation 1 4320 < th dose independent rect. 24 15
166 286.98 humidity 90 14400 > th dose dependent rect. 19 12
222 287.62 radiation 1 4320 > th dose independent sin 6 NA
226 287.68 humidity 90 14400 > th dose dependent no NA NA
230 287.71 humidity 90 14400 > th dose dependent rect. 14 23
232 287.74 radiation 1 4320 < th dose independent sin 6 NA
251 287.83 radiation 1 4320 > th dose independent rect. 5 5
253 287.85 radiation 1 4320 < th dose independent rect. 5 5
281 288.00 radiation 1 4320 < th dose independent rect. 20 14
318 288.11 humidity 90 14400 > th dose dependent rect. 4 23
325 288.17 radiation 1 4320 < th dose independent rect. 24 10
403 289.52 radiation 1 4320 < th dose dependent rect. 21 18
405 289.53 radiation 1 4320 < th dose dependent rect. 18 16
413 289.66 radiation 1 4320 < th dose dependent rect. 5 5
414 289.68 radiation 1 4320 < th dose dependent rect. 5 8
418 289.72 radiation 1 4320 < th dose dependent rect. 24 15
422 289.80 radiation 1 4320 < th dose dependent rect. 5 10
424 289.83 radiation 1 4320 < th dose dependent rect. 20 14
431 289.86 radiation 1 4320 < th dose dependent sin 6 NA
471 290.08 radiation 1 4320 < th dose dependent rect. 24 10
545 290.79 temperature 25 14400 < th dose dependent rect. 7 1
599 291.92 temperature 25 14400 < th dose dependent rect. 6 4
612 292.30 humidity 90 14400 < th dose independent rect. 24 19
613 292.35 humidity 90 14400 < th dose independent rect. 22 21
656 293.37 humidity 90 14400 > th dose independent rect. 5 10
658 293.41 humidity 90 14400 > th dose independent sin 3 NA
659 293.43 humidity 90 14400 < th dose independent rect. 20 17
672 293.60 temperature 30 14400 < th dose dependent rect. 11 1
679 293.72 humidity 90 14400 < th dose independent sin 4 NA
690 293.84 humidity 90 14400 > th dose independent rect. 22 21
702 294.14 atmosphere 1005 43200 < th dose independent rect. 15 9
704 294.16 humidity 90 14400 < th dose independent rect. 6 22
705 294.17 humidity 90 14400 > th dose independent rect. 21 19
707 294.22 temperature 25 14400 > th dose independent rect. 8 4
733 294.48 humidity 90 14400 > th dose independent rect. 21 16
735 294.50 humidity 90 14400 < th dose independent rect. 9 23
750 294.69 humidity 90 14400 > th dose independent rect. 1 18
762 294.81 humidity 90 14400 < th dose independent rect. 14 23
763 294.83 humidity 90 14400 < th dose independent no NA NA
776 294.93 temperature 25 14400 < th dose independent rect. 8 4
779 294.96 humidity 90 14400 > th dose independent rect. 1 15
807 295.19 atmosphere 1005 43200 < th dose independent rect. 11 13
811 295.22 humidity 90 14400 < th dose independent rect. 12 23
843 295.47 humidity 90 14400 < th dose independent rect. 9 19
849 295.55 temperature 20 14400 > th dose dependent rect. 11 1
859 295.62 temperature 25 14400 > th dose independent rect. 8 1
943 296.14 temperature 20 14400 > th dose dependent rect. 9 1
981 296.33 temperature 20 14400 > th dose dependent rect. 9 3